Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00238 ATGGTCCAACCGGCGCCGGCGATGACTCAGTTCCTCAACTCCGTCCTCTCCCAGCGCGGCCCCTCCGCGGTCCCTTATTCCGAGGACACCAAGTGGCTCATCCGCCAGCACCTCGTGGCGCTCACCACCGCCTTCCCTTCCCTCGAGCCCAAAACGGCGTCGTTCACCCACAACGACGGCCGTTCCGTCAACCTCCTCCAGGCCGACGGCACCATCCCGATGACGTTCCAAGGCGTCACCTACAACATCCCCGTCGTCATCTGGCTCATGGAATCCTACCCCCGCCACCCGCCCTGCGTCTACGTGAATCCCACGCGCGACATGATCATCAAGCGCCCTCACCCTCACGTTAACCCCTCTGGTTTGGTTTCCGTGCCTTATTTGCAGAATTGGACTTACCCTAGTTCCAACCTCGTCGATCTCATTCTCAATCTCAGCCTCCACTTCGGCCGCGACCCTCCTCTTTATTCCCAACGCAGACCTAACCCTAACCCCAACCCCAATCCCCATCCTCCTCCCAATTACGGAAATTCTCCCTCTAATTTATCATCTTCATCTTCATCTTCATCTGGCTATCCCCATGCCCATGCCCATGCCCACCCTCCTCCGAGGACTTACCCTCCTTCTCCTTACCCTGCCTCTTCTTCTAGGGTTCAGTCCTCTGAGGATCCTTCTGAGGTTTTCAAGCGCAACGCGATTAACAAGCTTGTGGAGATGGTTCATGGAGATGTTGCCGCGTTGAGGAAGACCCGGGAGGGTGAAATGGAGGAGCTGTTTAGTTTGCAGGGTGTGCTGAAACAACGCGAGGAGAGTCTCAACAAGGGTGTGAAGGAGATGCAGGAGGAGATGGAGGCTTTGGAGCAGCAGTTGCAGATGGTGTTGATGAATACTGATGTTTTGGAGGGGTGGCTGAGGGATAATCAGGGGAAGAAGATGGCCGGTTTGGAGAATCCCGAGGACGCTTTTGAGTGTGCGGATGTGCTCTCGAAGCAGATGCTTGACTGTACTGCTGCTGATTTGGCGATTGAGGATACGCTTTATGCGTTGGATAAGGCGCTTCAGGTGGGTGCTGTGCCATTTGATCAGTACTTGAGGAGTGTGAGGGCGCTGTCCAGGGAGCAGTTCTTTCATCGTGCCACCGCCACGAAAGTTAGGGCTGCTCAGTTGCAGGCTCAGGTTGCGAATATGGCTGCCCGGAGTCCGCATTATGGTAGCTAA 1218 0.5575 MVQPAPAMTQFLNSVLSQRGPSAVPYSEDTKWLIRQHLVALTTAFPSLEPKTASFTHNDGRSVNLLQADGTIPMTFQGVTYNIPVVIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVNPSGLVSVPYLQNWTYPSSNLVDLILNLSLHFGRDPPLYSQRRPNPNPNPNPHPPPNYGNSPSNLSSSSSSSSGYPHAHAHAHPPPRTYPPSPYPASSSRVQSSEDPSEVFKRNAINKLVEMVHGDVAALRKTREGEMEELFSLQGVLKQREESLNKGVKEMQEEMEALEQQLQMVLMNTDVLEGWLRDNQGKKMAGLENPEDAFECADVLSKQMLDCTAADLAIEDTLYALDKALQVGAVPFDQYLRSVRALSREQFFHRATATKVRAAQLQAQVANMAARSPHYGS 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00238 405 Gene3D Ubiquitin Conjugating Enzyme 3 156 IPR016135 -
Gma12g00238 405 MobiDBLite consensus disorder prediction 211 226 - -
Gma12g00238 405 Coils Coil 269 296 - -
Gma12g00238 405 PANTHER TUMOR SUSCEPTIBILITY GENE 101 PROTEIN-RELATED 9 403 - -
Gma12g00238 405 ProSiteProfiles Steadiness box (SB) domain profile. 326 394 IPR017916 -
Gma12g00238 405 Pfam UEV domain 35 155 IPR008883 GO:0015031|GO:0036211
Gma12g00238 405 Gene3D - 327 387 - -
Gma12g00238 405 MobiDBLite consensus disorder prediction 154 226 - -
Gma12g00238 405 MobiDBLite consensus disorder prediction 158 176 - -
Gma12g00238 405 SUPERFAMILY Endosomal sorting complex assembly domain 326 386 IPR037202 -
Gma12g00238 405 Pfam Vps23 core domain 320 383 IPR017916 -
Gma12g00238 405 MobiDBLite consensus disorder prediction 177 193 - -
Gma12g00238 405 SUPERFAMILY UBC-like 17 155 IPR016135 -
Gma12g00238 405 ProSiteProfiles UEV domain profile. 15 159 IPR008883 GO:0015031|GO:0036211
Gma12g00238 405 PANTHER PROTEIN ELC-LIKE 9 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00238 Gma-Chr12 1858666 1860403 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00238 K12183 - gmx:100798165 683.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00238 12 1858666 1860403 Gma11g00914 11 7649315 7651174 GST