Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00226 ATGATCTTCAACAAAAGCGCGTCTTCCACGCCCTGCACTTGGATCGCCTTGGACCGCACGTTCTCCTCCACCGCGAAATCGTTGGAGCCAAACGCGGTCTTGCTTCGATCCTCCGTGGGGTCCACGAATAAGCTCACTAGACTTTGCAAGACAACCACAGTGAAAACAAGGTACGTGGTTATGTCAGAGGAGATACTGAAAAAGTATCCAGAACTTGCAGCTGAAGGCATCCCCACAGTGAAGCAACGGCTAGAGATATGCAACGAGGCAGTGACAGAAATGGCAATTGAAGCTTCCCAAACTTGCATCAAGAACTGGGGTGGATCTTTATCAGACGTAACACACTTGGTGTATGTGTCATTCAGTGAAGCTAGACTACCTGGTGGTGACCTTTACCTAGAGAAAGGACTAGGACTGAGCCCTGATACTCAACGAGTCATGCTCTATTTTGCTGAAACTACTATTATTGGGTCCAAACCACCAAGTGTAGATAGACCCTATGATCTTGTTGGGGTGGCACTCTTTGGGGATGGTGCTGGTGCCATGATAATTGGCTCAGACCCAATATTGGAATCTGAGAGGCCTCTCTTTGAGCTTCACACTGCAGTTCAGGAGTTTTTGCGACACACTGAGAAGAAAATAGATGGGAGGCTGACAGAAGAAGGAATAAGCTTCAAGTTAGCTAGGGAACTTCCTCAAATAATTGAAGACAATGTTGAAGGATTCTGTGACAAATTAATGAGTGTTGTTGGGTTTGAGAACAAGGAGTACAACAAGCTGTTTTGGGCTGTACATCCAGGGGGGCCAGCCATCTTGAACCGCATTGAGAAGAGACTTGATTTGTTGCCAGAGAAGCTGAGTGCAAGTAGACGGGCTCTCATGGATTATGGCAATGCTAGCAGTAACACCATTGTGTATGTGCTGGAGTTTATGATAGAGGAAAGTCTCAAGATTAGAAAGGATGGCAGAGGAGATCTTGAATGGGGCTTGATACTTGCTTTTGGACCCGGGATTACATTTGAGGGAATTCTGGCCAGGAACTTGTGTGCTTGA 1053 0.4653 MIFNKSASSTPCTWIALDRTFSSTAKSLEPNAVLLRSSVGSTNKLTRLCKTTTVKTRYVVMSEEILKKYPELAAEGIPTVKQRLEICNEAVTEMAIEASQTCIKNWGGSLSDVTHLVYVSFSEARLPGGDLYLEKGLGLSPDTQRVMLYFAETTIIGSKPPSVDRPYDLVGVALFGDGAGAMIIGSDPILESERPLFELHTAVQEFLRHTEKKIDGRLTEEGISFKLARELPQIIEDNVEGFCDKLMSVVGFENKEYNKLFWAVHPGGPAILNRIEKRLDLLPEKLSASRRALMDYGNASSNTIVYVLEFMIEESLKIRKDGRGDLEWGLILAFGPGITFEGILARNLCA 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00226 350 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 43 151 IPR011141 GO:0009058|GO:0016747
Gma12g00226 350 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 151 348 IPR011141 GO:0009058|GO:0016747
Gma12g00226 350 PANTHER TYPE III POLYKETIDE SYNTHASE B 43 151 - -
Gma12g00226 350 PANTHER TYPE III POLYKETIDE SYNTHASE B 151 348 - -
Gma12g00226 350 Pfam Chalcone and stilbene synthases, C-terminal domain 198 348 IPR012328 -
Gma12g00226 350 SUPERFAMILY Thiolase-like 35 191 IPR016039 GO:0016746
Gma12g00226 350 CDD CHS_like 44 344 - -
Gma12g00226 350 Pfam Chalcone and stilbene synthases, N-terminal domain 151 188 IPR001099 -
Gma12g00226 350 Pfam Chalcone and stilbene synthases, N-terminal domain 43 150 IPR001099 -
Gma12g00226 350 Gene3D - 196 347 IPR016039 GO:0016746
Gma12g00226 350 PIRSF PKS_III 147 349 IPR011141 GO:0009058|GO:0016747
Gma12g00226 350 PIRSF PKS_III 10 152 IPR011141 GO:0009058|GO:0016747
Gma12g00226 350 Gene3D - 155 195 IPR016039 GO:0016746
Gma12g00226 350 Gene3D - 27 154 IPR016039 GO:0016746
Gma12g00226 350 SUPERFAMILY Thiolase-like 195 346 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00226 Gma-Chr12 1766425 1769447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00226 262 338 Miscellaneous Gene Families AT1G19440 38.961 1.96e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00226 - - vun:114168705 551.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00226 12 1766425 1769447 Gma12g00226 12 1766425 1769447 ECH
Gma12g00226 12 1766425 1769447 Gma11g00901 11 7574073 7575658 GST