Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g02220 ATGGAATCCCCTCATGCGAAGAAATCGGGGGGTTTGAAGCTCCCAGCTGGCATGTCCGGAACCTCACTCCGCCTCGACACCGCGCCAGCATCTTCTTCTTTCCGTTCTTCCATCTCGACCCTCAATTCTCCTTCTTCTCTCCGCTCCATCTCTAACCTCACATCGCCTTCGAAATCGAACTCGGCCTGCAGCGACCGGTTCATCCCGTGCAGATCCTCCTCGAGGCTGCACACGTTCGGGCTCGTGGACAGGCCGTCGCCGGTGAAGGAAGGGAGTAACGAAGCGTATTCGAGGTTGTTGAAATCGGAACTCTTTGGATCTGACTTTGCTTCTCCTTCTCTTTCTTCTCTTTCTTCTCCTGCAGGTGCTGCTGCTCCTCCTTCGCCTCTCAGTCCCAGCAAGAACATGCTCCGCTTCAAGACCGATCACTCCGCCGCGCCTTCTTCTCCTTATTCACCGTCCATTTTGGGACAGCAGAATGGCTTCACTTCTGACTCTTCCACACCGCCTCCCAAACCTCCTAGAAAAGTCCCCAAGACACCCCACAAGGTTGTGCAGGTTTTGGATGCACCATCACTTCAAGATGACTTTTATTTGAATCTGGTGGACTGGTCCACACAAAATGTTCTTGCAGTGGGGCTAGGCACTTGTGTTTATTTATGGAGCGCTTCAAACAGCAAAGTGACTAAGTTATGTGACTTGGGGCCTTATGATGGTGTTTGTTCTGTCCAGTGGACCCGGGAGGGTTCTTTTATATCAATTGGTACAAATCTTGGCCAAGTTCAGGTTTGGGATGGAACTCAGTGTAAGAAGGTCAGAACCATGGGTGGGCATCAGACAAGGACTGGTGTCTTGGCATGGAATTCTCGCATTTTGGCTTCAGGGAGCAGAGATAGGAACATACTTCAGCATGACATGAGGGTTCCAGGTGACTTTGTTAGCAAGCTTGTTGGTCACAAGTCTGAGGTATGTGGATTGAAATGGTCCTGTGATGACAGGGAACTTGCTTCTGGTGGTAATGATAATCAGCTCCTGGTATGGAATCAACACTCTCAGCAACCAGTTTTGAGACTTACCGAGCACACTGCTGCTGTGAAGGCCATTGCTTGGTCACCTCACCAAAGCAGTCTCCTTGTGTCTGGAGGTGGAACCGCTGATAGGTGCATTCGTTTTTGGAACACTACAAATGGCCATCAATTGAACTGTGTTGACACTGGGAGCCAGGTCTGCAACCTTGCTTGGAGTAAAAATGTGAATGAACTAGTAAGTACTCATGGGTACTCCCAAAATCAGATCATGGTGTGGAAATATCCATCATTGACAAAGGTTGCAACTCTAACTGGCCACAGCATGCGAGTGCTGTACCTTGCAATGTCTCCTGATGGTCAGACAATAGTAACTGGTGCAGGGGATGAGACTCTACGGTTTTGGAATGTTTTCCCATCAATGAAAGCACCGGCCCCCGTTAAAGATACAGGCCTTTGGTCACTGGGGCGCACACAAATTCGATGA 1512 0.4967 MESPHAKKSGGLKLPAGMSGTSLRLDTAPASSSFRSSISTLNSPSSLRSISNLTSPSKSNSACSDRFIPCRSSSRLHTFGLVDRPSPVKEGSNEAYSRLLKSELFGSDFASPSLSSLSSPAGAAAPPSPLSPSKNMLRFKTDHSAAPSSPYSPSILGQQNGFTSDSSTPPPKPPRKVPKTPHKVVQVLDAPSLQDDFYLNLVDWSTQNVLAVGLGTCVYLWSASNSKVTKLCDLGPYDGVCSVQWTREGSFISIGTNLGQVQVWDGTQCKKVRTMGGHQTRTGVLAWNSRILASGSRDRNILQHDMRVPGDFVSKLVGHKSEVCGLKWSCDDRELASGGNDNQLLVWNQHSQQPVLRLTEHTAAVKAIAWSPHQSSLLVSGGGTADRCIRFWNTTNGHQLNCVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSLTKVATLTGHSMRVLYLAMSPDGQTIVTGAGDETLRFWNVFPSMKAPAPVKDTGLWSLGRTQIR 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g02220 503 Gene3D - 134 480 IPR015943 GO:0005515
Gma11g02220 503 ProSitePatterns Trp-Asp (WD) repeats signature. 465 479 IPR019775 -
Gma11g02220 503 MobiDBLite consensus disorder prediction 116 181 - -
Gma11g02220 503 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 10 503 IPR033010 GO:0010997|GO:0097027|GO:1904668
Gma11g02220 503 ProSitePatterns Trp-Asp (WD) repeats signature. 380 394 IPR019775 -
Gma11g02220 503 ProSiteProfiles Trp-Asp (WD) repeats profile. 316 357 IPR001680 GO:0005515
Gma11g02220 503 MobiDBLite consensus disorder prediction 1 65 - -
Gma11g02220 503 ProSiteProfiles Trp-Asp (WD) repeats profile. 446 479 IPR001680 GO:0005515
Gma11g02220 503 PANTHER PROTEIN FIZZY-RELATED 3 10 503 - -
Gma11g02220 503 MobiDBLite consensus disorder prediction 24 65 - -
Gma11g02220 503 SMART WD40_4 181 222 IPR001680 GO:0005515
Gma11g02220 503 SMART WD40_4 268 305 IPR001680 GO:0005515
Gma11g02220 503 SMART WD40_4 309 348 IPR001680 GO:0005515
Gma11g02220 503 SMART WD40_4 351 393 IPR001680 GO:0005515
Gma11g02220 503 SMART WD40_4 399 436 IPR001680 GO:0005515
Gma11g02220 503 SMART WD40_4 439 478 IPR001680 GO:0005515
Gma11g02220 503 SMART WD40_4 225 265 IPR001680 GO:0005515
Gma11g02220 503 SUPERFAMILY WD40 repeat-like 194 479 IPR036322 GO:0005515
Gma11g02220 503 CDD WD40 219 478 - -
Gma11g02220 503 Pfam Eukaryotic translation initiation factor eIF2A 341 476 IPR013979 -
Gma11g02220 503 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 446 479 - -
Gma11g02220 503 MobiDBLite consensus disorder prediction 145 166 - -
Gma11g02220 503 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 316 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g02220 Gma-Chr11 37484824 37488901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g02220 313 479 Miscellaneous Gene Families AT5G08390 22.727 3.60e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g02220 K03364 - gmx:547741 917.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g02220 11 37484824 37488901 Gma11g02220 11 37484824 37488901 ECH
Gma18g00355 18 3050147 3055114 Gma11g02220 11 37484824 37488901 GST