Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g02202 ATGGAAGAAAGCCCTCGTGGTCGCAGAAAGCGAGCACACCCTTCTTCTCCTTCTCCTCCTTCGCCAATCTCCAAGAAGCCCCAAACCTTCCCTTCGTTCCAAGACATCCCCAATCTCCCTTCTAACATCAAATCCCTCTGCCACCTCATCGCCACCACCTCCGCCGCCACCGTCGAGCACTCCCTCCAATCCGCCGCCATCTCCGTCATCCCTCACGACGTCGAAGAAGTCCTCAAACTCTCCTACGGCTTCCCGGGCCAATCCGTCAAATTCTTCCGCTGGAGCGGCCGCCACCTCAACGACAACCACACGCCCTATTCCTGGAACCTCGTTGTCGATATCCTCGGCAGAAACCGCTTCTTCGACCCCATGTGGGACGCCGTTAAGTCAATGAACAAAGAAGGGTTACTCTCGCTCGCCACATTCGCCTCCGTCTTCAGCAGCTATGTTGCCGCTGACAGAATCCGTGAAGCAATTATGGCGTTTGAGATTATGGACAATTACGGTTGTGTGAGGGATGCTTTTGCTTTGAATTCGCTTTTGAGTGCAATTTGTAGCAATGGTAGGACTCTTGATGCTTGTGATTACTTGCAGGTTGCTAAGAAATTCGTCCGACCGGATACGGATACTTACGCGATTTTAATGGAGGGGTGGGAAGGGGAGAAGAGTATGGTTAGTGCTAAGGAGACATTTGCTGAGATGGTGATTGAGATTGGATGGGATCCTGCGAATGTGCCGGCTTATGATTCGTTCTTGTGTACACTTGTTAGAGGGCATGATGGATTGCTTGAGGCTATTAAGTTTGTTGATTCCATGAGGGATAGGAGGTGTTACCCCGGTGTGAGGTTTCTGAAGGCTGCATTGGATGAGTGTGTTAAGTGCCATGATGTTAGGACAGCTGAGTTTTTCTGGGAGGTGTTGGTGGTTGGGAAGGTGTTGCAGCCCACCTCTGAGATGTACAATTTGATGATCGGTTTGTGTTGCTATCGCGGTGACACCGATGCTGCAAGGAGGATGCTCCATGAGATGGTTTACCAAGGGGCTTTTCCTGATGTGGTGACTTATAACTTGTTGTTTAAGTTCTTGCTCAAGGGGAGGAAACTGAGGGAGGCTTCGTCGGTGTTTGCGGAGATGGTGCAGAATGAGTGTGTGCCGGAGCAGGATAACTGTGATTTGGCAGTTAAGGCGTATGTGGATTGCGGGGAGCCTGTTATGGCGATCAAGGTTTGGAAGTGTTTGGTGGAGAATTATAAGAAGGGTTTGGAGCAGACCGCGAATTTTCTGGTTGTGGGGCTTTGCAATTTGAACAGGCCACAGGTGGCGGTTAAGTATGCCGAGGATATGATTGGCAGGGGAATCAGTTTGTCCTCTTCCACATTGTCGAAGCTGAGACAAAGCCTTGTCAAGGAGAGAAGAGAATATGTGTATGAGGATCTTTTGAGAAAGTGGAAATCTCACTAG 1461 0.4997 MEESPRGRRKRAHPSSPSPPSPISKKPQTFPSFQDIPNLPSNIKSLCHLIATTSAATVEHSLQSAAISVIPHDVEEVLKLSYGFPGQSVKFFRWSGRHLNDNHTPYSWNLVVDILGRNRFFDPMWDAVKSMNKEGLLSLATFASVFSSYVAADRIREAIMAFEIMDNYGCVRDAFALNSLLSAICSNGRTLDACDYLQVAKKFVRPDTDTYAILMEGWEGEKSMVSAKETFAEMVIEIGWDPANVPAYDSFLCTLVRGHDGLLEAIKFVDSMRDRRCYPGVRFLKAALDECVKCHDVRTAEFFWEVLVVGKVLQPTSEMYNLMIGLCCYRGDTDAARRMLHEMVYQGAFPDVVTYNLLFKFLLKGRKLREASSVFAEMVQNECVPEQDNCDLAVKAYVDCGEPVMAIKVWKCLVENYKKGLEQTANFLVVGLCNLNRPQVAVKYAEDMIGRGISLSSSTLSKLRQSLVKERREYVYEDLLRKWKSH 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g02202 486 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 351 385 IPR002885 -
Gma11g02202 486 MobiDBLite consensus disorder prediction 1 30 - -
Gma11g02202 486 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 11 485 - -
Gma11g02202 486 PANTHER OS02G0711100 PROTEIN 11 485 - -
Gma11g02202 486 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 316 350 IPR002885 -
Gma11g02202 486 Pfam PPR repeat family 316 362 IPR002885 -
Gma11g02202 486 TIGRFAM PPR: pentatricopeptide repeat domain 353 385 IPR002885 -
Gma11g02202 486 TIGRFAM PPR: pentatricopeptide repeat domain 141 174 IPR002885 -
Gma11g02202 486 TIGRFAM PPR: pentatricopeptide repeat domain 319 351 IPR002885 -
Gma11g02202 486 Gene3D Tetratricopeptide repeat domain 191 285 IPR011990 GO:0005515
Gma11g02202 486 Gene3D Tetratricopeptide repeat domain 54 190 IPR011990 GO:0005515
Gma11g02202 486 Gene3D Tetratricopeptide repeat domain 286 399 IPR011990 GO:0005515
Gma11g02202 486 Pfam PPR repeat 141 170 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g02202 Gma-Chr11 37249876 37251336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g02202 102 472 Glycosyltransferase AT1G05670 24.029 4.28e-18 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g02202 - - gmx:100808606 904.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00369 18 3227938 3229992 Gma11g02202 11 37249876 37251336 GST