Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g02200 ATGGCTGATGATGATCCACAAGATGTAGCCGATAGGGAACGCATTTTCAAGCATTTTGATTCCGATGGTGATGGCCAAGTCTCTTCACAAGAGCTTGGTGATGCCCTTAAAGCACTTGGATCGGTGACCCCGGAAGAAGTGCAACGGATGATGGCAGAGATTgatacagatggtgatggcttcatttcacacgatacagatggtgatggcttcatttcacacgaAGAGTTCATAAATTTTGCACGAGCCAACCGTGGCCTAGTGAGGGATGTAGCCAAGATTTTTGGTTTTTTAAGTTCTTGCTCTTAA 309 0.3625 MADDDPQDVADRERIFKHFDSDGDGQVSSQELGDALKALGSVTPEEVQRMMAEIDTDGDGFISHDTDGDGFISHEEFINFARANRGLVRDVAKIFGFLSSCS 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g02200 102 Gene3D - 2 65 - -
Gma11g02200 102 PANTHER POLCALCIN NIC T 1 4 64 - -
Gma11g02200 102 PANTHER POLCALCIN NIC T 1 65 95 - -
Gma11g02200 102 ProSitePatterns EF-hand calcium-binding domain. 65 77 IPR018247 -
Gma11g02200 102 ProSitePatterns EF-hand calcium-binding domain. 20 32 IPR018247 -
Gma11g02200 102 SUPERFAMILY EF-hand 8 83 IPR011992 -
Gma11g02200 102 PANTHER TROPONIN 4 64 - -
Gma11g02200 102 PANTHER TROPONIN 65 95 - -
Gma11g02200 102 CDD EFh 13 63 IPR002048 GO:0005509
Gma11g02200 102 Pfam EF hand 65 80 IPR002048 GO:0005509
Gma11g02200 102 ProSiteProfiles EF-hand calcium-binding domain profile. 61 87 IPR002048 GO:0005509
Gma11g02200 102 Pfam EF-hand domain pair 14 63 IPR002048 GO:0005509
Gma11g02200 102 ProSiteProfiles EF-hand calcium-binding domain profile. 7 42 IPR002048 GO:0005509
Gma11g02200 102 SMART efh_1 11 39 IPR002048 GO:0005509
Gma11g02200 102 SMART efh_1 46 74 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g02200 Gma-Chr11 37230589 37230897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g02200 5 95 EF-hand Containing Proteins AT3G03430 60.440 5.66e-34 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g02200 K13448 - gmx:100776519 208.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g02200 11 37230589 37230897 Gma14g02104 14 52134003 52134257 PCT
Gma11g02200 11 37230589 37230897 Gma02g02325 02 49346625 49346879 PCT
Gma14g02104 14 52134003 52134257 Gma11g02200 11 37230589 37230897 PCT
Gma02g02325 02 49346625 49346879 Gma11g02200 11 37230589 37230897 PCT