Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g00782 ATGATCCGGCGGCACGCAGCGTTTGACCCAGAAGTGGCAAGCAAAGTGTGCGGTACTGTGATTGAACCATTTTTGCTGTCACTGGCAAAGACTTCAAACCTCGTAACTCTGAGACACTGCAACCAAATCCACGCTAAGCTCATAGCCTCCCAATGCATTTCACAAACCCACTTAACCAACAACCTCTTGAGCCTGTACGCCAAATTTGGCCACTTTCGCCATGCCCACCTCCTGTTCGACCAAATGCCTCAGAGGAACGTTTTCACCTGGACAACCTTAATTTCCTCGCATTTCCGAACCGGGTCACTTCCAAAAGCCTTTGAGATGTTTAATCACATTTGTGCATTGAATGAGAGACCCAATGAGTACACCTTCTCTGTTCTGCTTCGAGCTTGTGCCACTCCTTCATTGTGGAATGTGGGTTTGCAGATTCATGGCCTGCTGGTTCGGTCTGGGCTTGAGAGGAACAAGTTTTCTGGGAGCTCTATTGTGTATATGTACTTTAACAGTGGTAGTAATCTTGGGGATGCATGTTGCGCCTTTCATGACTTGTTGGAGAGAGACCTTGTTGCATGGAATGTTATGATTTCTGGGTTTGCTCGTGTTGGTGACTTTAGCATGGTTCATAGGTTGTTTTCTGAAATGTGGGGAGTGGAAGGCTTGAAACCTGATGATTGTACCTTTGTTAGCTTACTCAAGTGCTGTTCTTCATTGAAAGAGTTAAAGCAAATTCATGGGCTTGCATCTAAGTTTGGTGCTGAAGTTGATGTTGTGGTGGGCAATGCTCTGGTTGACTTGTATGGCAAACATGGGGATGTCAGTTCTTGCAGGAAAGTCTTTGACTCCAAGAAGGAGAAGTATAATTTTGTTTGGAGTTTAATCATTTCAGGCTATTCCATGAACAAAGGGAGTTCAAGTGCATGGCCAAATGATAAAATATGGGCATCAAAGCCATTTTTTGTAGCAAGTGTGTTGTTCACTCTCTGTGCCAGTGTTGGAGAACTTGTGGATGTGGAAAAGTTGTTCAGAAGAATTGATGATAAAGATATTGTAACATGGAATTCAATGATCTTGGCTCATGCTCGGTTGACGCAGGGATCTGGTTCCTCTATGAAACTATTACAAGAACTTCATGGAACAACCTCTTTGCAAATTCAAGGTGCCTCCTTGGTTGCTGTTTTAAAGTTTTGTGAGAATAAGTCAGATTTACCAGGTAGGCAAATTCATTCACTTGTAGTGAAATCAAGTGTAAGTCATCATACTTTTGTTGGCAATGCATTAGTCCACATGTACTCTGAGTGTGGACAAATTGGTGATGCATTTAAAGCTTTTGTTGACATTGGAAAGATGATGGTTCTTGGAGTTCTATTATTGGAAATTATAGACAAAATGGGATGGAACCAAAAGCTTTAG 1413 0.4246 MIRRHAAFDPEVASKVCGTVIEPFLLSLAKTSNLVTLRHCNQIHAKLIASQCISQTHLTNNLLSLYAKFGHFRHAHLLFDQMPQRNVFTWTTLISSHFRTGSLPKAFEMFNHICALNERPNEYTFSVLLRACATPSLWNVGLQIHGLLVRSGLERNKFSGSSIVYMYFNSGSNLGDACCAFHDLLERDLVAWNVMISGFARVGDFSMVHRLFSEMWGVEGLKPDDCTFVSLLKCCSSLKELKQIHGLASKFGAEVDVVVGNALVDLYGKHGDVSSCRKVFDSKKEKYNFVWSLIISGYSMNKGSSSAWPNDKIWASKPFFVASVLFTLCASVGELVDVEKLFRRIDDKDIVTWNSMILAHARLTQGSGSSMKLLQELHGTTSLQIQGASLVAVLKFCENKSDLPGRQIHSLVVKSSVSHHTFVGNALVHMYSECGQIGDAFKAFVDIGKMMVLGVLLLEIIDKMGWNQKL 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g00782 470 TIGRFAM PPR: pentatricopeptide repeat domain 190 224 IPR002885 -
Gma11g00782 470 TIGRFAM PPR: pentatricopeptide repeat domain 88 122 IPR002885 -
Gma11g00782 470 Gene3D Tetratricopeptide repeat domain 138 253 IPR011990 GO:0005515
Gma11g00782 470 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 318 447 - -
Gma11g00782 470 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 28 236 - -
Gma11g00782 470 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 105 301 - -
Gma11g00782 470 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 105 301 - -
Gma11g00782 470 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 318 447 - -
Gma11g00782 470 Gene3D Tetratricopeptide repeat domain 17 137 IPR011990 GO:0005515
Gma11g00782 470 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 188 223 IPR002885 -
Gma11g00782 470 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 86 120 IPR002885 -
Gma11g00782 470 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 28 236 - -
Gma11g00782 470 Pfam PPR repeat 261 285 IPR002885 -
Gma11g00782 470 Pfam PPR repeat family 85 133 IPR002885 -
Gma11g00782 470 Pfam PPR repeat family 188 235 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g00782 Gma-Chr11 6540365 6541873 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g00782 43 444 Glycoside Hydrolase AT3G49170 26.432 9.15e-37 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g00782 - - gmx:102667531 723.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g00782 11 6540365 6541873 Gma11g00782 11 6540365 6541873 ECH
Gma01g01628 01 51966617 51968917 Gma11g00782 11 6540365 6541873 GST