Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01628 ATGATCCGGCACGCAGCGTTTGACCCAGAAGTGGCAAGCAAAGTGTGTAGTGTGATTGAACCATTTTTGCTGTCACTGGCAAAGACTTCAAACCCCATAACTCTGAGATACTGCAACCAAATCCACGCAAAGCTCATAGTCTCCCAATGCATTTCACAGACCCACTTAACCAACACCCTCTTGAGCCTCTACGCCAAATTTGGCCACTTTCACCATGCCCACCTCCTGTTCGACCAAATGTCTCACAGGAACGTTGTCACCTGGACAACCTTAATTTCGTCGCATCTCCGAACTGGGTCACTTCCAAAAGCCTTTGAGATGTTCAATCAAATGTGTGCTTTGAATGAGAGACCCAATGAGTACACCTTCTCTGTCCTGCTTCGAGCTTGTGCCACTCCTTCATTGTGGAATGTGGGTTTGCAGATTCATGGCCTGCTGGTTCGGTCTGGGCTCGAGAGAAACAAGTTTGCTGGGAGCTCTATTGTGTATATGTACTTTAAAAGTGGTAGTAATCTCGGGGATGCCTTTCGTGCTTTTCATGACTTGTTGGAGAGAGACCTTGTTGCATGGAATGTTATGATTTTTGGGTTTGCTCAAGTTGGTGACTTAAGCATGGTTCGTAGGTTGTTTTCTGAAATGTGGGGAGTCAAAGGCTTGAAACCTGATGATAGTACCTTTGTTAGCTTACTTAAGTGTTGTTCTTCGTTGAAAGAGTTAAAGCAAATTCATGGGCTTGCATCTAAGTTTGGTGCTGAAGTTGATGTTGTGGTGGGCAGTGCCCTGGTTGACTTGTATGCCAAATGTGGGGATGTAAGTTCTTGCAGGAAAGTCTTTGACTCCATGGAGGAGAAGGACAATTTTGTTTGGAGTTCTATCATTTCAGGCTATACCATGAATAAGAGAGGAGGGGAAGCTGTGCATTTCTTCAAGGACATGTGTAGACAAAGGGTGAGACCAGATCAGCACGTGCTATCAAGTACTTTGAAAGCTTGCGTTGAATTAGAGGACTTGAACACAGGAGTTCAAGTGCATGGCCAAATGATAAAATATGGGCATCAAAGCGATTGCTTTGTAGCAAGCGTGTTGTTGACTCTCTATGCCAGTGTCGGTGAACTTGTGGATGTGGAAAAGTTGTTCAGAAGAATTGATGATAAAGATATTGTAGCATGGAACTCAATGATCTTGGCTCATGCTCGGTTGGCACAGGGATCTGGTCCCTCTATGAAACTATTACAAGAACTTCGTGGAACAACCTCTTTGCAAATTCAAGGTGCCTCCTTGGTTGCTGTTTTAAAGTCTTGTGAGAATAAATCAGATTTGCCTGCAGGTAGGCAAATTCATTCACTTGTAGTGAAATCAAGTGTAAGTCATCATACTTTGGTTGGCAATGCATTAGTCTACATGTACTCTGAGTGTGGACAAATTGGTGATGCATTTAAAGCTTTTGATGACATTGTCTGGAAAGATGATGGTTCTTGGAGTTCTATCATTGGAACTTATAGACAAAATGGGATGGAATCAGAAGCTTTAGAGCTATGCAAAGAGATGTTGGCTGATGGAATCACTTTTACGAGTTATAGCCTTCCTCTGTCTATTTCAGCTTGCTCGCAACTTTCAGCTATACATGTGGGTAAACAGTTCCATGTTTTTGCTATCAAGTCTGGTTACAACCATGATGTGTATGTTGGAAGCTCCATTATAGATATGTACGCTAAATGTGGAATCATGGAGGAGTCAGAGAAAGCTTTTGATGAACAAGTAGAGCCTAATGAAGTAATTTATAATGCCATGATCTGTGGATATGCTCATCATGGAAAAGCACAACAAGCCATAGAAGTATTTAGTAAGTTGGAGAAGAATGGTTTAACCCCCAATCACGTAACTTTCTTAGCTGTACTATCAGCTTGTAGCCATTCGGGTTATGTAGAAGATACCTTGCATTTTTTTGCATTGATGCTTAACAAATACAAGATTAAGCCAGAATCTGAGCATTATTCGTGCTTAGTTGATGCCTATGGCCGGGCAGGAAGGCTTGAGGAAGCATACCAAATAGTGCAGAAGGTTGGAAGTGAATCAGCATGGAGAACATTACTAAGCGCTTGTAGGAATCATAATAACAAAGAAATTGGAGAAAAATGTGCAATGAAGATGATAGAATTCAATCCTAGTGATCATGTTGCCTATATTCTTCTTTCCAACATTTACATTGGAGAGGGAAAATGGGAAGAAGCTCTTAAATGTAGGGAGAGGATGACCGAGATTTGTGTGAAGAAAGATCCAGGTAGTAGTTGGTTGATCTGA 2301 0.4185 MIRHAAFDPEVASKVCSVIEPFLLSLAKTSNPITLRYCNQIHAKLIVSQCISQTHLTNTLLSLYAKFGHFHHAHLLFDQMSHRNVVTWTTLISSHLRTGSLPKAFEMFNQMCALNERPNEYTFSVLLRACATPSLWNVGLQIHGLLVRSGLERNKFAGSSIVYMYFKSGSNLGDAFRAFHDLLERDLVAWNVMIFGFAQVGDLSMVRRLFSEMWGVKGLKPDDSTFVSLLKCCSSLKELKQIHGLASKFGAEVDVVVGSALVDLYAKCGDVSSCRKVFDSMEEKDNFVWSSIISGYTMNKRGGEAVHFFKDMCRQRVRPDQHVLSSTLKACVELEDLNTGVQVHGQMIKYGHQSDCFVASVLLTLYASVGELVDVEKLFRRIDDKDIVAWNSMILAHARLAQGSGPSMKLLQELRGTTSLQIQGASLVAVLKSCENKSDLPAGRQIHSLVVKSSVSHHTLVGNALVYMYSECGQIGDAFKAFDDIVWKDDGSWSSIIGTYRQNGMESEALELCKEMLADGITFTSYSLPLSISACSQLSAIHVGKQFHVFAIKSGYNHDVYVGSSIIDMYAKCGIMEESEKAFDEQVEPNEVIYNAMICGYAHHGKAQQAIEVFSKLEKNGLTPNHVTFLAVLSACSHSGYVEDTLHFFALMLNKYKIKPESEHYSCLVDAYGRAGRLEEAYQIVQKVGSESAWRTLLSACRNHNNKEIGEKCAMKMIEFNPSDHVAYILLSNIYIGEGKWEEALKCRERMTEICVKKDPGSSWLI 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01628 766 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 25 241 - -
Gma01g01628 766 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 211 520 - -
Gma01g01628 766 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 317 765 - -
Gma01g01628 766 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 174 321 - -
Gma01g01628 766 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 84 118 IPR002885 -
Gma01g01628 766 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 285 319 IPR002885 -
Gma01g01628 766 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 590 624 IPR002885 -
Gma01g01628 766 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 186 221 IPR002885 -
Gma01g01628 766 Pfam E motif 704 765 IPR046848 -
Gma01g01628 766 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 489 523 IPR002885 -
Gma01g01628 766 SUPERFAMILY TPR-like 463 753 IPR011990 GO:0005515
Gma01g01628 766 Gene3D Tetratricopeptide repeat domain 404 544 IPR011990 GO:0005515
Gma01g01628 766 Gene3D Tetratricopeptide repeat domain 241 337 IPR011990 GO:0005515
Gma01g01628 766 Gene3D Tetratricopeptide repeat domain 34 136 IPR011990 GO:0005515
Gma01g01628 766 Gene3D Tetratricopeptide repeat domain 545 643 IPR011990 GO:0005515
Gma01g01628 766 Gene3D Tetratricopeptide repeat domain 137 240 IPR011990 GO:0005515
Gma01g01628 766 PANTHER - 211 520 - -
Gma01g01628 766 PANTHER - 174 321 - -
Gma01g01628 766 PANTHER - 25 241 - -
Gma01g01628 766 PANTHER - 317 765 - -
Gma01g01628 766 TIGRFAM PPR: pentatricopeptide repeat domain 188 222 IPR002885 -
Gma01g01628 766 TIGRFAM PPR: pentatricopeptide repeat domain 492 522 IPR002885 -
Gma01g01628 766 TIGRFAM PPR: pentatricopeptide repeat domain 86 120 IPR002885 -
Gma01g01628 766 TIGRFAM PPR: pentatricopeptide repeat domain 58 85 IPR002885 -
Gma01g01628 766 TIGRFAM PPR: pentatricopeptide repeat domain 288 320 IPR002885 -
Gma01g01628 766 TIGRFAM PPR: pentatricopeptide repeat domain 592 625 IPR002885 -
Gma01g01628 766 TIGRFAM PPR: pentatricopeptide repeat domain 665 686 IPR002885 -
Gma01g01628 766 Gene3D Tetratricopeptide repeat domain 648 764 IPR011990 GO:0005515
Gma01g01628 766 Gene3D Tetratricopeptide repeat domain 338 403 IPR011990 GO:0005515
Gma01g01628 766 Pfam PPR repeat 664 687 IPR002885 -
Gma01g01628 766 Pfam PPR repeat 288 315 IPR002885 -
Gma01g01628 766 Pfam PPR repeat 259 284 IPR002885 -
Gma01g01628 766 Pfam PPR repeat 492 521 IPR002885 -
Gma01g01628 766 Pfam PPR repeat family 589 637 IPR002885 -
Gma01g01628 766 Pfam PPR repeat family 83 131 IPR002885 -
Gma01g01628 766 Pfam PPR repeat family 186 233 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01628 Gma-Chr1 51966617 51968917 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01628 91 765 Glycoside Hydrolase AT3G49170 30.825 1.14e-107 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01628 - - gmx:102667531 1532.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01628 01 51966617 51968917 Gma01g01628 01 51966617 51968917 ECH
Gma01g01628 01 51966617 51968917 Gma11g00782 11 6540365 6541873 GST