Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g00576 ATGTGGATGCACTTGAGGCCGTTCTTTCGCGAGGCTAACCTGTTAAACGGGTTAACCTCGCGAGTGCAAGCCCGTTCCTATGCTCGTCGTCGCGAACCGTTTCCCACCAAAGTTTCTCACTACCTCCACCGTGCAAAACTCATTGACTCCATTAGACTTACTCTACGCTCCAACACCCCCAACCCCTCCCTTCCCTCTCTCATAAACCACCGTCTTATGGACTCTTTCGTGGCCACTCATGCACTTCGCTCTGCCCCTTCTGCTGATTCCGCTCTCTCCTTCGTCCGTGCCCTCGAAAAAAGTTCTCATTTTTCCCACACCCACCACACACTCCATTCACTTGCCACTGTTCTTGCCAAGTCTGGTCGAAGCTCTGAGCTCAAATCCCTCGTTGATGATATCCGAGCCAACCGGTTCGGCTCTGTTCAGATCAGTTTCATGAATCTCATGCAGTGGCATGCTGCAGTTAGGGACCTTGACACTGTTCTTCAGGTGTGGGAACAGTATGCACTTGAGAATGACCATCTATGTACTGAATCTTACAACATTGTTATGACTCTTTATGCTCAAATGGGAAAGGACTTTGAGGCTGTTCGAGTTTTTCGCAGGATGATTGATGAAGGGTCTCTTCCGAATTGCAGAAGCTATACTGTGATAATCGAGCACCTTGTGAAGTCGCGCAAGTTATCGGAAGCATTGGAGGTTTTTAACCTGTTGCCTTCAATGAGGATCAAACGCACCTTGAGACAGTACTCTGTTCTGCTTGAGGGTTTTGTAGGTAGCAAACAGTTTGACGAAGTGAGAATTTTAGTTGAGGAAATGCAGGTTGATGGAATATTGCCTAGTAGAGGCATGGGTCTGTTGCTGCAGCAGATGAAGGAGGAAGGAATTCTTGAAGGCAAGGAGCAATTGTTGAGAGGAATTTTGCCAGATGAGACAATCAGGAGTGTAAGTTATTCTATTGATAGTGGTGATGAGGATGAAAATGAGAATGAGGACCAAGATGAGAATATAAGTGATGCTGGTCAATGTAATCATGTTGATGGAATTCATTTAAAACCGTGGATGGACCCACGGGCTTTGGTCAGTGCCTTGCGGAATTGGAGTCCTGATGAGGTAGCAGCACTAGAGAGTGCAAACTTTGTATGGACAACAAGGTTGGTTTGCAAGATGCTTAGGAATTTCAAAACACCAGAAGCTGCATGGAGTTTCTTCTGTTGGGCTGCCAATCAGCGTGGATTTACTCATGACATATACACGGTACAAAGAATCACTACCCTTCTAGCACGTCATGGACGTACTGACTTGGTTGATAGACTCATCTCCAAGATCAGAATGGAGAGAATGAGACTACCATTCAGCACCATCAGGATGATCATTGACTTCTATGGGATTTCAAAAAAAGCTGATGCTGCTCTGAAGGTTTTCAATGATGATCGAATACTTTGCGGTCCCATATCAAATGTTAACTTGATGCTTCTTTATTCCTCTCTTCTAAGAACATTGACAAAGTGTGGAAGAAATTCTGATGCCCTGGATATGCTTGATGACATGATTTTAAATGGTATTTGCCCAGATATCCAGACATTTTCAGGCCTAATGTACTATTTTTCACAGCTTGGAGATATAAAAACAGTGCAGAAGCTCTTTGCAATGGTTAGGCAGAGCGGTTTAGAGCCAGATGCTTATTTGTTTAAGGCATTAATCCAAGGTTATTGCAAGTCAGAAAGAGCTGCACTAGCATGGAGACTATTTGAAGACATGAAGAATTCAGGTTTGGTGCCTGACTCTGCCACCAAAGAGTTGCTAGTAAAGAGCCTCTGGAAAGAAGGGAGACGGAGAGAGGCTGCTGCAGTGGAAGAAAGTTATGAGGAAATAAATACGGTCCTTCCACTTGCATTGCAGGGTCATGTATGGACTGTCAGCTCTGCAGATCTCACAAGAGTTTATAATATTTATTCAAATTCTTTTGATTAA 1977 0.4426 MWMHLRPFFREANLLNGLTSRVQARSYARRREPFPTKVSHYLHRAKLIDSIRLTLRSNTPNPSLPSLINHRLMDSFVATHALRSAPSADSALSFVRALEKSSHFSHTHHTLHSLATVLAKSGRSSELKSLVDDIRANRFGSVQISFMNLMQWHAAVRDLDTVLQVWEQYALENDHLCTESYNIVMTLYAQMGKDFEAVRVFRRMIDEGSLPNCRSYTVIIEHLVKSRKLSEALEVFNLLPSMRIKRTLRQYSVLLEGFVGSKQFDEVRILVEEMQVDGILPSRGMGLLLQQMKEEGILEGKEQLLRGILPDETIRSVSYSIDSGDEDENENEDQDENISDAGQCNHVDGIHLKPWMDPRALVSALRNWSPDEVAALESANFVWTTRLVCKMLRNFKTPEAAWSFFCWAANQRGFTHDIYTVQRITTLLARHGRTDLVDRLISKIRMERMRLPFSTIRMIIDFYGISKKADAALKVFNDDRILCGPISNVNLMLLYSSLLRTLTKCGRNSDALDMLDDMILNGICPDIQTFSGLMYYFSQLGDIKTVQKLFAMVRQSGLEPDAYLFKALIQGYCKSERAALAWRLFEDMKNSGLVPDSATKELLVKSLWKEGRRREAAAVEESYEEINTVLPLALQGHVWTVSSADLTRVYNIYSNSFD 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g00576 658 MobiDBLite consensus disorder prediction 320 340 - -
Gma11g00576 658 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 212 246 IPR002885 -
Gma11g00576 658 Gene3D Tetratricopeptide repeat domain 362 481 IPR011990 GO:0005515
Gma11g00576 658 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 177 211 IPR002885 -
Gma11g00576 658 TIGRFAM PPR: pentatricopeptide repeat domain 495 527 IPR002885 -
Gma11g00576 658 TIGRFAM PPR: pentatricopeptide repeat domain 180 213 IPR002885 -
Gma11g00576 658 TIGRFAM PPR: pentatricopeptide repeat domain 215 245 IPR002885 -
Gma11g00576 658 TIGRFAM PPR: pentatricopeptide repeat domain 565 597 IPR002885 -
Gma11g00576 658 Gene3D Tetratricopeptide repeat domain 490 645 IPR011990 GO:0005515
Gma11g00576 658 MobiDBLite consensus disorder prediction 323 337 - -
Gma11g00576 658 Gene3D Tetratricopeptide repeat domain 80 349 IPR011990 GO:0005515
Gma11g00576 658 Pfam PPR repeat 180 208 IPR002885 -
Gma11g00576 658 Pfam PPR repeat 215 241 IPR002885 -
Gma11g00576 658 Pfam PPR repeat 495 523 IPR002885 -
Gma11g00576 658 Pfam PPR repeat 251 279 IPR002885 -
Gma11g00576 658 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 247 281 IPR002885 -
Gma11g00576 658 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 561 595 IPR002885 -
Gma11g00576 658 Pfam PPR repeat family 560 607 IPR002885 -
Gma11g00576 658 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 491 525 IPR002885 -
Gma11g00576 658 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 526 560 IPR002885 -
Gma11g00576 658 PANTHER OS01G0167750 PROTEIN 3 657 IPR044175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g00576 Gma-Chr11 4852833 4854809 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g00576 412 643 Glycosyltransferase AT1G05670 27.778 4.29e-16 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g00576 - - gmx:100779372 1259.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g00576 11 4852833 4854809 Gma11g00576 11 4852833 4854809 ECH
Gma01g01824 01 53820164 53823302 Gma11g00576 11 4852833 4854809 GST