Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01824 ATGGAGGGAATGAGACTGCCATTCAGCACCATCAGGCTGATCATTGACTTTTATGGGATTTCTAAAAATGCTGATGCTGCTCTGAAGGTTTTTAATGATGATAGAATACTTTGCGGTCCTATATCAAATGTTAACTTGATGCTTCTGTATTCCTCTCTTCTAAGAACATTGACAAAGTGTGGAAGAAATTCTGATGCCCTGGATATGCTTGATGACATGATTTTAAATGGTATTTGCCCAGATATCCAGACATTTTCAGGCCTAATGCAATATTTTTCACAGCTTGGAGATATAAAAACAGTGCAGAAGCTCTTTGCAATGGTTAGGCAGAGCGGTTTAGAGCCAGATGCTTATTTGTTTAAGGTATTAATCCAAGGTTATTGCAAGTCAGAAAGAGCTGCACTAGCATGTAGACTATTTGAAGACATGAAGAATTCAGGTTTGGTGCCTGACTCTGCCACCAAAGAGTTGCTAGTAAAGAGCCTATGGAAAGAGGGAAGACGAAGAGAGGCTGCTGCAGTGGAAGAAAGTTATGAGGAAATAAATACTGTCCTTCCACTTGCATTGCAGGGTCATGTGAAGCGTAGAACTGTGTTCACGGTGGCTTTGGTGGTTGTGGGGAGCATGGTGGTGGGTGTGGCGGCGGGCGTCGACGCCGGTGAGAGGCAGAGCAAAAGGCTGAGGGGCGAAGACGCGAACGGCAACGAGAATGACGAGTCCAAGAAGGATTGCAATAGAGACAGAGAGAAGAGGGAGAGAAACTGA 765 0.4444 MEGMRLPFSTIRLIIDFYGISKNADAALKVFNDDRILCGPISNVNLMLLYSSLLRTLTKCGRNSDALDMLDDMILNGICPDIQTFSGLMQYFSQLGDIKTVQKLFAMVRQSGLEPDAYLFKVLIQGYCKSERAALACRLFEDMKNSGLVPDSATKELLVKSLWKEGRRREAAAVEESYEEINTVLPLALQGHVKRRTVFTVALVVVGSMVVGVAAGVDAGERQSKRLRGEDANGNENDESKKDCNRDREKRERN 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01824 254 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 116 150 IPR002885 -
Gma01g01824 254 Gene3D Tetratricopeptide repeat domain 3 197 IPR011990 GO:0005515
Gma01g01824 254 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 46 80 IPR002885 -
Gma01g01824 254 PANTHER OS01G0167750 PROTEIN 2 194 IPR044175 -
Gma01g01824 254 Pfam PPR repeat family 122 162 IPR002885 -
Gma01g01824 254 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 81 115 IPR002885 -
Gma01g01824 254 TIGRFAM PPR: pentatricopeptide repeat domain 50 82 IPR002885 -
Gma01g01824 254 TIGRFAM PPR: pentatricopeptide repeat domain 120 152 IPR002885 -
Gma01g01824 254 Pfam PPR repeat 50 78 IPR002885 -
Gma01g01824 254 MobiDBLite consensus disorder prediction 222 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01824 Gma-Chr1 53820164 53823302 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01824 53 186 Glycosyltransferase AT1G05670 25.000 1.64e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01824 - - gmx:100779372 347.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01824 01 53820164 53823302 Gma01g01824 01 53820164 53823302 ECH
Gma01g01824 01 53820164 53823302 Gma11g00576 11 4852833 4854809 GST