Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g00243 ATGGATGATGACCTTTTCCAGAGGAACAAAACACCATCTGGTGTCATAAAAGCGATAAAGTTTGATGTCTTAACTGAAGAAGATATAGAGAATATCGCTGTTTTGGAGATAAATGCAGCCGGGCAGGTCACTGGGTCAAGTTTGGGTTTCCCAAATGCATCTGATGAGTGTGCCACATGTGGCTCTAAAGACAAAAGGTTCTGTGAAGGTCATTTTGGAGTAATCAAATTTCCTACTCCCATACTCCATCCATATTTTATGTCAGAAATTGCGCACATCTTGAACAAGATTTGCCCTGTTTGTAAATCTATTCGTCACAAATCCAAGGGTGTTCGATTGATCTATGGAACCAAGCGGTCTAATGATTGCAATTATTGTTCTGCGTATCCATCAATGAAATTCAGAGTTTCTTCCAACGATCTCTTTAGAAGAACTGCAATTATTGTTGAAGTAAAGGCTTCAAAGAAAACTTTGGGGACAGAAATACCTGCTGATTATTGGAATTTTATTCCTTGTGATGCTCAACAAGAAGAAAACTATGTAAATAGAAGGGTTTTATCTCCTGCACAGGTTCTTAATTTGTTGAATGGTGTTGATCCAGACTTTATTGAAAAATATATTCCAAGAAAGAATTTGCTGTATCTTAATTGCTTCCCGGTGACTCCAAATTGTCATCGTGTGACAGAAGTTCCTTATGCAATTTCTAGTGGAAGCCGATTGAGTTTTGATGACAGGACTCGATCTTGTAAGAAATTGGTTGATTTCAGGGGTACGCCCAATGAATTAAGTTCTCGTGTTTTGGATTGCTTGAGGATCTCTAAGGCAAGATGCTCAGCTCTAAATCCCGATAAAACACCAAATAGTATTTTTGCTGATATCCAGCAAAGAAAGATTGGAGAAAATGCTTGCAATTCTTCTGGTTTAAGATGGATAAAAGATGTGGTTCTTGGAAAACGCAATGATAGTTCATTACGTACTGTGGTTGTTGGTGATCCAGACCTTGAGCTTAGTGAAGTTGGTATACCTTGTCATATTGCTGAAAGTTTGCAGGTTTCTGAGTATGTGAATAGGCAGAATAGGGAGAAGCTGCTTTATTGTTGTGAGCTACGCTTGTTAGAGAAGGGGAAAATAGATGTCTGCAGAAATGGTAGTAAAGTTCATCTGTATAAAAAGGAAGATCTACAAATAGGTGACAAAATTTATAGGCCTCTTGCTGATGGGGATAAAGTGCTGATAAATAGGCCCCCTTCCATACATCAACATTCTATGATTGCTCTCACAGTTAGGGTCCTTCCAATATCTTCTGTAGTGTGTATTAACCCACTCTGTTGTTCCCCATTACGTGGGGATTTTGATGGTGATTGCCTTCACGGGTATATTCCACAATCAGTTACTGCAAGAATTGAGCTTAATGAGCTGGTTGCTTTAGATAGGCAATTGATTAACGGGCAAAGTGGTAGAAATCTGCTTTCACTTTCCCAGGATAGTTTGACTGCTGCTTATTTGCTAATGGAAGATGGGGTCCTTTTGAATGTTTATCAAATGCAGCAGCTTCAAATGCTTTCTATTTCTGACAAAAGATTAATACCTCCTGCAGTTGTTAAAGCTCCTTCAAGTAATAGCTCACTTTGGAGTGGGAAGCAAATATTCAGCATGCTCTTGCCTTATGATTTTGACTATTCTTTTCCTTCAGATGGTGTTGTTGTTAGTGATGGGGAGCTTGTATCTTCTTCTGAGGCTTCTGGTTGGTTACGCGATTCTGACTACAATGTTTTCCAGAGTCTTGTGGAACATTATCAAGGGAAGACTCTAAACTTTTTGTATACAGCGCAAAAAGTTCTGTGTGAGTGGCTGTCTATGACAGGTTTTAGTGTTTCACTCTCAGATTTGTACCTTTCTTCTGATTCCTATGCACGGAAAAACATGATAGAGGAAATCTTTTATGGCTTACAAGATGCAGAGCAGGCTTGTAATTTCAAGCAGCTATTGTTGGATTGTTATTGTGATTTTCTGTCAGGAAGTATCCAAGAGAGTGAAAATGCTATCACTGTTGATGCTGATCGTCTGAATTATGAAAGACAAATATCTGCTGCTCTCAGTCAAGCGTCAGTTGATGCTTTTAGGCAAGTTTTTCGCAATATTCAAAGTTTAGCTGACAAATATGCATGTAAGGACAATGCTTTCCTTGCAATGTTTAAGGCTGGAAGCAAGGGTAATTTGTTGAAATTAGTTCAACATTCCATGTGCCTTGGCATGCAAAATTCTCTGGTCCGCTTGTCATACAGATTACCCCGTCATCTTTCATGTGCTGCTTGGAATAGTCAAAAGTGGCTTGATTCAATCCAGATGTCTTCTGGTACCCTTGAATCTGTTCAGTCTTACATTCCATATGCTGTGGTTGAAAGCTCATTTTTAACTGGGTTGAATCCACTTGAATGTTTTGTTCATTCAGTGACAAATCGTGATAGCTCTTTCAGTGACCATGCAGACCTTCCTGGAACACTGACACGTAGACTTATGTTCTTCATGCGTGATTTGCATGATGCATATGATGGAACTGTGAGAAATTTATATGGTAATCAACTTATTCAGTTTTCTTATGATATTGAAGAGGACTCTTCATGTGATAAAGGTTTCCAAGAGTATGCTATAGGTGGTGAACCAGTTGGGGCAATTTCTGCTTGTGCAATTTCTGAAGCTGCATACAGTGCTTTGGGTCAACCAGTTAGTCTACTCGAAACATCACCTTTGCTGAATTTGAAAAATGTTTTGGAGTGTGGTTCAAGGAAAAGAAATGGTGATCAGACTGTGTCTTTATTTTTGTCTGAAAAGCTTGGTAAACAGAGACATGGGTTTGAATATGCAGCTTTAGAAGTCAAGAATTATTTGGAAAGATTGTTGTTCTCAAACATTGTTTCTACAGTGATGATAATATTCACCCCACATGACGGCAGCAGCCAAGAAAAATACAGTCCTTGGGTCTGCCACTTTCATTTAGACAAGGAAATTGTAACTAGAAGAAAATTGAAAGTGCATTCTATCATTGACTCTCTCTACCAGAGATATTACTCACAGAGAAAAGACTCAAAAGTCTGTTTTACCAATTTGAAAATTTCAAGCAAGAAGTGTTCTGCTGATTCCATGGCTAAGGAAGGTGAAGACACTTCTATAGATAAAAAAGAGGGTGATGATTGCATCACAGTCACAATTGTTGAAAACTCTAAGAATCCTATACAACTGGATTCTGTTCGGGATTTGGTGATACCTTTTCTTCTAGGAACAGCAATAAAAGGATTTCTGGATGTCAAGAAGGTTGATGTTCTCTGGAATAATCAGTCAAAAGTAAAAAATTCTTGTAATGGTTTTTCTGGTGAACTGTACTTGAGGGTAACTTTGTCCAGCGAGGGTAGCAGAGGAAGATTTTGGGGTGTACTCCTAAATCTTTGTCACAAGATAATGCATATAATTGACTGGACACGCAGTCATCCAGATAACATCAATCATTTCTCATCAGCATATGGAATTGATGCAGGGTGGCAATACTTTTTCAATAGTTTGGCATCTGCAACATCTGATACCGGCAAGTCCATCCTTCCTAAGCATTTGTGTCTTGTTGCCAATAGTCTGTCATGTAGTGGAGAGTTTGTGGGATTAAATGCTAAAGGCATGGCACTACAAAGAAAACATGCGTCAGTTTCATCACCATTCGTGCAAGCATGCTTTGCGAATCCAGGTAGTTGCTTTATAAAAGCTGCTAAGTCTGGAGTCACTGATAATCTCCAGGGCAGTCTGGATGCGTTGGCTTGGGGAAACTGTCTATCTATGGGGACAAGTGGAATGTTTGATATCATATATTCAGAGAAGGTATTGGTAGCTAAGTCTGGGAATGTGTATGAGCTGCTAGAAGCCAGTTTTGACAAGCCGAACAATAAAGCTGGTACTCATTTGCACAAATATTCATCTGACAAATGCGGTTCTGAGTTTAGGCATAAAAATGGTTATGCCTTGAAAGAGGGAAAACAGTGGAAAACCATTTTAAGAAATTTTGTGACGGTAAATGATATCCAGAAGCTGACTTTTGCTTCGAGGTGCATATTGAACAAGTATTCAATTGATGAGCTGCTAAGTGAGAGTGACAGGTCAACAATGCTAAGGGTTTTGAATTTTCATCCTCGTAAAAGTGAGAAGTTTGGCATTGGACCACAGGACATTAAGGTTGGATGGCATCCAAAATACAAGGATAGCCGGTGCTTCCATATAGTAAGAATTGATGGGACGGTTGAAGATTTTTCATACCGCAAATGCATTCTTGGTGCTCTTGATATCGTTGATCCAAAAAAGTCAAAGATCCAGGAGAAAAAATGGTCAGGACATGTAATGGGAATATGGTGGTGGAGGCTGATACTGGTTTCTCTTGCTGGGATTCTCTTCTCTCCTAAACATGGTGCTTCACAGAGAGTTACAGGTATGAAATATACGTTTATGAAGAATGCAAGCTCAGCTCCAAGCGTGTCATACTACGAGTACGAGTACATCGTAATTGGTGGGGGGACGGCGGGGTGCCCTTTAGCAGCGACACTGTCCGAAAAACACAAGGTTTTGGTGCTTGAACGAGGTCCTTCACCTTATGGCAACCCCAACATCACCAATTTGGATGCTTTTGGCGCTGCACTCTCTGACACCTCCCCTAACTCTCCCTCTCAACGCTTCATCTCCCAAGACGGAGTCATCAACTCCAGAGCTCGCGTCTTAGGTGGCGGAAGCTGTTTGAACGCCGGCTTCTACACTCGCGCTAGCCCTTACTACGTAAGGGAAGCTGGTTGGGATGGAAAGTTGGTGAAGAAGTCTTATGAATGGGTGGAGCGAGTGGTGGCATTTGAGCCGATTGTGCGGCAGTGGCAATCAGCAGTGCGGGGTGGATTGTTGGAAGTAGGAGTGCTTCCTTACAATGGCTTCACTTTCGATCATATTAGAGGCACTAAGGTTGGGGGCACCATCTTCGACCAACACGGTCACAGGCACACCGCCGCGGATCTTCTGGAATATGCTAACCCCACTCAACTTACTGTACTCTTGCAAGCCACCGTCTCTAAGATCTTGTTTACAAACAAAGGTAGTAGATCAAGGCCAGTGGCGAGTGGAGTGATATTCATGGATGCATTGGGGAGAGAACACAGGGTATACCTGAAGCAGGGTCCCAAGAGCGAGATAATTGTCTCAGCTGGTGCACTGGGAAGCCCACAGCTTCTAATGTTGAGTGGAATAGGAGCAGAACGTGAGCTTAGGAAACACAACATTGATGTGGTGTTGAATCAGCCCTTGGTTGGACAGGGAATGTCGGATAACCCGATGAACGCTATCTTTGTCCCGTCCCCTGTCCCCGTTGAGGTATCCCTCATAGAGGTGGTCGGCATCACCAACGTTGGCAGCTACATTGAAGCCGCCAGTGGTCAAATGTTCACCTCTCGTTCTCCTAGAGATTACGGCATGTTTTCTCCCAAGGTACAATATCCCCATCTACTCTAA 5526 0.4135 MDDDLFQRNKTPSGVIKAIKFDVLTEEDIENIAVLEINAAGQVTGSSLGFPNASDECATCGSKDKRFCEGHFGVIKFPTPILHPYFMSEIAHILNKICPVCKSIRHKSKGVRLIYGTKRSNDCNYCSAYPSMKFRVSSNDLFRRTAIIVEVKASKKTLGTEIPADYWNFIPCDAQQEENYVNRRVLSPAQVLNLLNGVDPDFIEKYIPRKNLLYLNCFPVTPNCHRVTEVPYAISSGSRLSFDDRTRSCKKLVDFRGTPNELSSRVLDCLRISKARCSALNPDKTPNSIFADIQQRKIGENACNSSGLRWIKDVVLGKRNDSSLRTVVVGDPDLELSEVGIPCHIAESLQVSEYVNRQNREKLLYCCELRLLEKGKIDVCRNGSKVHLYKKEDLQIGDKIYRPLADGDKVLINRPPSIHQHSMIALTVRVLPISSVVCINPLCCSPLRGDFDGDCLHGYIPQSVTARIELNELVALDRQLINGQSGRNLLSLSQDSLTAAYLLMEDGVLLNVYQMQQLQMLSISDKRLIPPAVVKAPSSNSSLWSGKQIFSMLLPYDFDYSFPSDGVVVSDGELVSSSEASGWLRDSDYNVFQSLVEHYQGKTLNFLYTAQKVLCEWLSMTGFSVSLSDLYLSSDSYARKNMIEEIFYGLQDAEQACNFKQLLLDCYCDFLSGSIQESENAITVDADRLNYERQISAALSQASVDAFRQVFRNIQSLADKYACKDNAFLAMFKAGSKGNLLKLVQHSMCLGMQNSLVRLSYRLPRHLSCAAWNSQKWLDSIQMSSGTLESVQSYIPYAVVESSFLTGLNPLECFVHSVTNRDSSFSDHADLPGTLTRRLMFFMRDLHDAYDGTVRNLYGNQLIQFSYDIEEDSSCDKGFQEYAIGGEPVGAISACAISEAAYSALGQPVSLLETSPLLNLKNVLECGSRKRNGDQTVSLFLSEKLGKQRHGFEYAALEVKNYLERLLFSNIVSTVMIIFTPHDGSSQEKYSPWVCHFHLDKEIVTRRKLKVHSIIDSLYQRYYSQRKDSKVCFTNLKISSKKCSADSMAKEGEDTSIDKKEGDDCITVTIVENSKNPIQLDSVRDLVIPFLLGTAIKGFLDVKKVDVLWNNQSKVKNSCNGFSGELYLRVTLSSEGSRGRFWGVLLNLCHKIMHIIDWTRSHPDNINHFSSAYGIDAGWQYFFNSLASATSDTGKSILPKHLCLVANSLSCSGEFVGLNAKGMALQRKHASVSSPFVQACFANPGSCFIKAAKSGVTDNLQGSLDALAWGNCLSMGTSGMFDIIYSEKVLVAKSGNVYELLEASFDKPNNKAGTHLHKYSSDKCGSEFRHKNGYALKEGKQWKTILRNFVTVNDIQKLTFASRCILNKYSIDELLSESDRSTMLRVLNFHPRKSEKFGIGPQDIKVGWHPKYKDSRCFHIVRIDGTVEDFSYRKCILGALDIVDPKKSKIQEKKWSGHVMGIWWWRLILVSLAGILFSPKHGASQRVTGMKYTFMKNASSAPSVSYYEYEYIVIGGGTAGCPLAATLSEKHKVLVLERGPSPYGNPNITNLDAFGAALSDTSPNSPSQRFISQDGVINSRARVLGGGSCLNAGFYTRASPYYVREAGWDGKLVKKSYEWVERVVAFEPIVRQWQSAVRGGLLEVGVLPYNGFTFDHIRGTKVGGTIFDQHGHRHTAADLLEYANPTQLTVLLQATVSKILFTNKGSRSRPVASGVIFMDALGREHRVYLKQGPKSEIIVSAGALGSPQLLMLSGIGAERELRKHNIDVVLNQPLVGQGMSDNPMNAIFVPSPVPVEVSLIEVVGITNVGSYIEAASGQMFTSRSPRDYGMFSPKVQYPHLL 1841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g00243 1841 PANTHER DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1 2 1354 - -
Gma11g00243 1841 Gene3D - 1626 1821 - -
Gma11g00243 1841 Pfam RNA polymerase Rpb1, domain 4 698 759 IPR007083 GO:0003677|GO:0003899|GO:0006351
Gma11g00243 1841 PANTHER DNA-DIRECTED RNA POLYMERASE 2 1354 IPR045867 GO:0003899|GO:0006351
Gma11g00243 1841 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 11 1288 - -
Gma11g00243 1841 SMART rpolaneu7 211 504 IPR006592 GO:0003677|GO:0003899|GO:0006351
Gma11g00243 1841 Gene3D - 669 808 IPR038120 -
Gma11g00243 1841 Gene3D - 312 483 - -
Gma11g00243 1841 Gene3D - 1347 1438 - -
Gma11g00243 1841 CDD RNAP_IV_RPD1_N 24 855 IPR040403 -
Gma11g00243 1841 Gene3D RNA polymerase Rpb1, domain 3 484 632 IPR042102 -
Gma11g00243 1841 Pfam GMC oxidoreductase 1509 1783 IPR000172 GO:0016614|GO:0050660
Gma11g00243 1841 ProSitePatterns GMC oxidoreductases signature 2. 1742 1756 IPR000172 GO:0016614|GO:0050660
Gma11g00243 1841 Gene3D RNA polymerase II, clamp domain 6 114 IPR044893 -
Gma11g00243 1841 Pfam RNA polymerase Rpb1, domain 2 317 474 IPR000722 GO:0003677|GO:0003899|GO:0006351
Gma11g00243 1841 Pfam RNA polymerase Rpb1, domain 1 16 247 IPR007080 GO:0003677|GO:0003899|GO:0006351
Gma11g00243 1841 Pfam Protein of unknown function (DUF3223) 1365 1436 - -
Gma11g00243 1841 SUPERFAMILY FAD/NAD(P)-binding domain 1507 1801 IPR036188 -
Gma11g00243 1841 Pfam RNA polymerase Rpb1, domain 3 480 630 IPR007066 GO:0003677|GO:0003899|GO:0006351
Gma11g00243 1841 Gene3D RNA polymerase ii 350 402 - -
Gma11g00243 1841 Gene3D - 1509 1781 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g00243 Gma-Chr11 1927546 1944071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g00243 1492 1828 Miscellaneous Gene Families AT5G51950 61.834 1.24e-129 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g00243 K16250 - gmx:100796185 2905.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g00243 11 1927546 1944071 Gma11g00243 11 1927546 1944071 ECH
Gma01g02166 01 56934708 56946332 Gma11g00243 11 1927546 1944071 GST