Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g02166 ATGGATGATGACCTTTTACAGAGGAACAAAACACCATCTGTTGTCATAAAAGCGATAAAGTTCGATGTCTTAACTGAAGAAGATATAGAGAATATCTCTGTTTTGGAGATAAATGCAGCCGGGCAGGTCACTGGGTCAAATTTGGGATTGCCAAATGCATCTGATGAGTGTGCCACATGTGGCACTAAAGACAAAAAGTTCTGTGAAGGTCATTTTGGAGTAATCAAATTTCCTACTCCCATACTCCATCCATATTTTATGTTAGAAATTGCGCACATCTTGAACAAGATTTGCCCTGTTTGTAAATCTATTCGTCACAAATCCAAGGGTGCTCGATTAATCTATGGAACCAAGCGGTCTAATGATTGCAATTATTGTTCTGTGTATCCATCAATGCAATTTAGAGTTTCCTCCAACGATCTCTTTAGAAGAACTGCAATTATTGTTGAAGTAAAGGCTTCAAAGAAAACTTTGGGAACAGAAATACCTGCTGATTTTTGGAATTTTATTCCTTGTGATGCTCAACAAGAAGAAAATTATGTAAATAGAAGGGTTTTATCACCTGTGCAGGTTAATTATTTGTTGAATGATGTTGATCCAGACTTTATTGAAAAATATATTCCAAGAAAGAATTTGCTGTGTCTTAATTGCTTCCCGGTGACTCCAAATTGTCATCGTGTGACAGAAGTCCCTTATGCAATTTCTAGTGGAAGCCGGTTGAGTTTTGATGACAGGACTCGATCTTGTAAGAAATTGGTTGATTTCAGGGGTACAGCTAATGAATTAAGTTCTCGTGTTTTGGATTGCCTGAGGATCTCTAAGGCAAGATTCTCAGCTCTAAATCCTGATAAAACCCCAAATAGTATTTTTGCTGATATCCAGCAAAGAAAGATTGGAGAAAATGCTTTCAATTCTTCTGGTTTAAGATGGATAAAAGATGTGGTTCTTGGAAAACGCAATGACAGTTCATTCCGTACTGTGGTTGTTGGTGATCCAGACCTTGAGCTTAGTGAAATTGGTATACCTTGTCATATTGCTGAAAGTTTGCAGGTTTCTGAGTATGTGAATAGGCAGAATAGGGAGAAGCTGCTTTATTGTTGTGAGCTACACTTGTTAGAGAAGGGGAAAATAAATGTCTGCAGAAAGGGTAGTATAGTTCATCTGTATAAAAAGGAAGATCTACAAATAGGTGACAAATTTTATAGGCCTCTTGCTGATGGGGATAAAGTGCTGATAAATAGGCCCCCTTCTATACATCAACATTCTATGATTTCTCTCACAGTTAGGGTCCTTCCAATATCTTCTGTAGTGTGTATTAACCCACTCTGTTGTTCCCCACTACGTGGGGATTTTGATGGTGATTGCCTTCACGGGTATATTCCACAATCGGTTACTGCAAGAATTGAGCTTAATGAGCTGGTTGCTTTAGATAGGCAATTGATTAATGGGCAAAGTGGTAGAAATCTTCTTTCACTTTCCCAAGATAGTTTGACTGCTGCATATTTGCTAATGGAAGATGGGGTCCTTTTGAATGTTTATCAAATGCAGCAGCTTCAAATGCTTTCTATTTCTAACAAAAGATTAATACCTCCTGCAGTTGTTAAAGCTCCCTCTAGTAATAGCTCACTTTGGAATGGGAAGCAATTATTCAGCATGCTTTTGCCGTATGATTTTGACTATTCTTTTCCTTCAGATGGTGTTGTTGTTAGTGATGGAGAGCTTGTATCTTCTTCTGAGGCTTCTGGTTGGTTACGCGATTCTGACTACAATGTTTTTCAGAGTCTTGTGGAACATTATCAAGGGAAGACTCTAAACTTTTTGTATGCAGCACAAAAAGTTCTGTGTGAGTGGCTGTCTATGACAGGTTTTAGTGTTTCACTCTCTGATTTGTACCTTTCTTCTGATTCGTATGCACGGGAAAACATGATAGAGGAAATCTTTTATGGCTTACAAGATGCAGAGCGGGCTTGTAATTTCAAGCAGCTATTGTTGGATTATTATTGTGATTTTCTGTCAGGAAGTCTTCAAGAGAGTGAAAATGCTATCACTGTTAATGCAGATCGTCTGAATTATGAAAGACAAATATCTGCTTCTCTCAGTCAAGCGTCAGTTGATGCTTTTAGGCAAGTTTTTCGCAATATTCAAAGTTTAGCTGATAAATATGCATGCAAGGGAAATTCTTTCCTTGCAATGTTTAAGGCTGGAAGCAAGGGTAATTTGCTGAAATTAGTTCAACATTCCATGTGCCTTGGCATGCAAAATTCTCTGGTCCGCTTGTCATACAGACTACCCCGTCATCTTTCATGTGCTGACTGGAATAGTCAAAAGTGGGTTGATTCAATCCAGATGTCTTCTGGTACCCTTGAATCTGTTCAGTCATACATTCCATATGCTGTAGTTGAAAGTTCTTTTTTAACTGGGTTGAATCCACTTGAATGTTTTGTTCATTCAGTGACAAATCGTGATAGCTCTTTCAGTGACCATGCGGACCTTCCTGGTACACTGACACGTAGACTTATGTTCTTCATGCGTGATTTGTATGATGCATATGATGGAACGGTGAGAAATTTATATGGTAATCAACTTATTCAGTTTTCTTATGATATTGAAGAGGACTCTTCATGCAATAAAGGTTTCCAGCAGTATGCTTTAGGTGGTGAATCAGTTGGGGCTATTTCTGCCTGTGCAATTTCTGAAGCTGCATACAGTGCTTTGGGTCAACCAGTTAGTCTACTCGAAACATCACCTTTGCTGAATTTGAAAAATGTTCTGGAGTGTGGTTCAAGGAAAAGAAATGGTGATCAGACTGTGTCTTTATTTTTGTCTGAAAAGCTTGGTAAACAGAGACATGGGTTTGAATATGCAGCTTTAGAAGTCAAGAATTATTTGGAAAGATTGTTGTTCTCAAACATTGTTTCTAAAGTGATGATAATATTCACCCCACATGACAGCAGGAGCCAAGAAAAATACAGTCCTTGGGTCTGCCACTTTCATTTAGACAAGGAAATTGTAACAAGAAGAAAATTGAAAGTGCATTCTATCATTGACTCTCTCTATCAGAGATATTACTCTCAGAGAAAAGACTCAAAAGTCTGTTTTACCAATTTGAAAATTTCAAGCAGCAGGAAGTGTTCTGCTGATTCCATGGTTAAGGAAGGTGAAGACACTTCTATAGATAAAGAAGAGGGTGATGATTGCATCATGGTCACAATTGTTGAAAACTCTAAGAATCCTATACAACTGGATTCTGTTCGGGACTTGGTGATACCTTTTCTTCTAGGAACAGCAATACAAGGATTTCTGGATGTCAAGAAGGTTGATATTCTCTGGAATAATCAGTCAAAAGTAACAAATTCTCGTAATGGTTTTTCTGGTGAACTGTACTTGAGGGTAACTTTGTCCAGCGAGGGTAGCAGAGGAAGATTTTGGGGTGTCCTCCTAAAGCTTTGTCACAAGATAATGCATATAATTGACTGGACACGAAGTCATACAGATAACATCAATCATTTCTCATCAGCATATGGAATTGATGCAGGGTGGCAATACTTTTTCAATAGTTTGGCATGTGCAACATCTGATACCGGCAAGTCCATCCTTCCTAAGCATTTGTGTCTTGTTGCCAATAGTCTGTCATGTAGTGGAGAGTTTGTAGGATTAAATGCTAAAGGCATGGCACTACAAAGAAAACATGCGTCCGTTTCATCACCATTTGTGCAAGCATGCTTTGCGAATCCAGGTAGTTGCTTTATAAAAGCTGCTAAGTCTGGAGCCACGGATAATCTCCAGGGCAGCCTGGATGGGTTGGCTTGGGGAAACTGTCTATCTATGGGGACAAGTGGAATGTTTGATGTCATATATTCAGAGAAGGGACATCAGGTAGCTAAGTCTGTAGATGTGTATGAGCTGCTAGAAGCCAGTTTTGACAAGCCGAACAATAAAATTGGTACTCATTTGCACAAATATTCATCTGACAAATGCGGTTCTGAGTTTAGGCATAAAAATGGTTATGCCTTGAAAGAGGGAAAACAGTGGAAAACCATTTTAAGAAATTTTGTGACAGTAAATGATATTCAGAAGCTGACTTTTGCATCGAGGTGCATATTGAACAAGTATTCAATTGATGAGCTGCTAAGTGAGAGTGACAGGTCAACAATGCTAAGGGTTTTGAATTTTCATCCTCATAAAAGTGAGAAGTTTGGCATTGGACCACAGGAcattaagGTTGGATGGCATCCAAAATACAAGGATAGCCGGTGCTTCCATATAATAAGAACTGATGGGACGGTTGAAGATTTTTCATACCGCAAATGCATTCTTGGTGCTCTTGATATCGTTGATCCAAAAAAATCAAAGATCCAGGAGAAAAAATGGTCAGGACATGGTGACACGTAA 4392 0.3864 MDDDLLQRNKTPSVVIKAIKFDVLTEEDIENISVLEINAAGQVTGSNLGLPNASDECATCGTKDKKFCEGHFGVIKFPTPILHPYFMLEIAHILNKICPVCKSIRHKSKGARLIYGTKRSNDCNYCSVYPSMQFRVSSNDLFRRTAIIVEVKASKKTLGTEIPADFWNFIPCDAQQEENYVNRRVLSPVQVNYLLNDVDPDFIEKYIPRKNLLCLNCFPVTPNCHRVTEVPYAISSGSRLSFDDRTRSCKKLVDFRGTANELSSRVLDCLRISKARFSALNPDKTPNSIFADIQQRKIGENAFNSSGLRWIKDVVLGKRNDSSFRTVVVGDPDLELSEIGIPCHIAESLQVSEYVNRQNREKLLYCCELHLLEKGKINVCRKGSIVHLYKKEDLQIGDKFYRPLADGDKVLINRPPSIHQHSMISLTVRVLPISSVVCINPLCCSPLRGDFDGDCLHGYIPQSVTARIELNELVALDRQLINGQSGRNLLSLSQDSLTAAYLLMEDGVLLNVYQMQQLQMLSISNKRLIPPAVVKAPSSNSSLWNGKQLFSMLLPYDFDYSFPSDGVVVSDGELVSSSEASGWLRDSDYNVFQSLVEHYQGKTLNFLYAAQKVLCEWLSMTGFSVSLSDLYLSSDSYARENMIEEIFYGLQDAERACNFKQLLLDYYCDFLSGSLQESENAITVNADRLNYERQISASLSQASVDAFRQVFRNIQSLADKYACKGNSFLAMFKAGSKGNLLKLVQHSMCLGMQNSLVRLSYRLPRHLSCADWNSQKWVDSIQMSSGTLESVQSYIPYAVVESSFLTGLNPLECFVHSVTNRDSSFSDHADLPGTLTRRLMFFMRDLYDAYDGTVRNLYGNQLIQFSYDIEEDSSCNKGFQQYALGGESVGAISACAISEAAYSALGQPVSLLETSPLLNLKNVLECGSRKRNGDQTVSLFLSEKLGKQRHGFEYAALEVKNYLERLLFSNIVSKVMIIFTPHDSRSQEKYSPWVCHFHLDKEIVTRRKLKVHSIIDSLYQRYYSQRKDSKVCFTNLKISSSRKCSADSMVKEGEDTSIDKEEGDDCIMVTIVENSKNPIQLDSVRDLVIPFLLGTAIQGFLDVKKVDILWNNQSKVTNSRNGFSGELYLRVTLSSEGSRGRFWGVLLKLCHKIMHIIDWTRSHTDNINHFSSAYGIDAGWQYFFNSLACATSDTGKSILPKHLCLVANSLSCSGEFVGLNAKGMALQRKHASVSSPFVQACFANPGSCFIKAAKSGATDNLQGSLDGLAWGNCLSMGTSGMFDVIYSEKGHQVAKSVDVYELLEASFDKPNNKIGTHLHKYSSDKCGSEFRHKNGYALKEGKQWKTILRNFVTVNDIQKLTFASRCILNKYSIDELLSESDRSTMLRVLNFHPHKSEKFGIGPQDIKVGWHPKYKDSRCFHIIRTDGTVEDFSYRKCILGALDIVDPKKSKIQEKKWSGHGDT 1463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g02166 1463 Pfam RNA polymerase Rpb1, domain 4 694 756 IPR007083 GO:0003677|GO:0003899|GO:0006351
Gma01g02166 1463 Gene3D RNA polymerase II, clamp domain 6 115 IPR044893 -
Gma01g02166 1463 Gene3D RNA polymerase ii 350 402 - -
Gma01g02166 1463 SMART rpolaneu7 211 504 IPR006592 GO:0003677|GO:0003899|GO:0006351
Gma01g02166 1463 Pfam RNA polymerase Rpb1, domain 1 16 247 IPR007080 GO:0003677|GO:0003899|GO:0006351
Gma01g02166 1463 Gene3D - 670 808 IPR038120 -
Gma01g02166 1463 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 11 1287 - -
Gma01g02166 1463 PANTHER DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1 2 1356 - -
Gma01g02166 1463 CDD RNAP_IV_RPD1_N 24 855 IPR040403 -
Gma01g02166 1463 Pfam Protein of unknown function (DUF3223) 1367 1438 - -
Gma01g02166 1463 Gene3D - 1349 1440 - -
Gma01g02166 1463 Pfam RNA polymerase Rpb1, domain 2 317 474 IPR000722 GO:0003677|GO:0003899|GO:0006351
Gma01g02166 1463 Gene3D RNA polymerase Rpb1, domain 3 484 632 IPR042102 -
Gma01g02166 1463 Gene3D - 312 483 - -
Gma01g02166 1463 Pfam RNA polymerase Rpb1, domain 3 480 630 IPR007066 GO:0003677|GO:0003899|GO:0006351
Gma01g02166 1463 PANTHER DNA-DIRECTED RNA POLYMERASE 2 1356 IPR045867 GO:0003899|GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g02166 Gma-Chr1 56934708 56946332 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g02166 K16250 - gmx:100810483 2924.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g02166 01 56934708 56946332 Gma01g02166 01 56934708 56946332 ECH
Gma01g02166 01 56934708 56946332 Gma11g00243 11 1927546 1944071 GST