Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g02267 ATGCAAATGAAGATAGCAGGCCCGTTTTCTGAGGGTTTTCACACAGTTAAGAACCGTTCTTTGCTTTGGGTACGCAGATTTCATACGCAGAACATTCTTCACTGCAAATCATCAATGGATTCCTCTGCCAACAACAAAGAGAAAGAGAAAGTGCAAGTGCAACCCACACCCGAAGAAGACCCCGAGAAGAAAAGGAAAAAGGAAGAAAAGGCTAGAGAGAAGCAATTGAAGAAAGAGAAGTTTCTTCAGAAGCAAGCTCAGCAACAAGCACAGCAATCATCCAATGCTTCTACTTCTAAAAAGAGTGAAAAGAAAGTTGTGAAGCGTGGTGGGGAGGGTGAGAATCCTGAAGATTATGTTGATCCCGAGACTCCATCGGGTGAGAAGAAGCGTATGGCTCGGCAAATGGCCAAGCAATATAGTCCAACTGCCGTGGAGAAATCGTGGTATGAGTGGTGGGAGGAATCACAGTATTTTGTGGCAGATGCTAACAGCTCCAAACCACCTTTTGTCATTGTTTTGCCCCCTCCGAATGTGACTGGTGCTCTCCATATAGGTCATGCTCTAACAGCCGCAATAGAGGATACAATGATTCGATGGCGGAGAATGTCTGGATACAATGCCTTGTGGGTGCCTGGAATGGATCATGCTGGGATTGCTACACAGGTAGTTGTGGAGAAAAAGCTATTTCGCGAAAAAAACCTAACCAGGCATGATCTGGGCCGTGAGAAATTTGTCTCTGAGGTTTGGGAGTGGAAACACAAGTATGGGGGCACAATATTACAACAATTACGCCGATTAGGAGCCTCTTTGGATTGGTCTCGTGAGTGCTTCACAATGGATGAAAGAAGATCTAAGGCTGTGACGGAGGCTTTTGTAAGGCTTTACAAACAAGGCCTTATCTATAGGGATCTTCGTTTAGTGAATTGGGATTGTGTTTTACGAACTGCAATATCTGATATTGAGGTGGATTATTTGGAAATAAAAGAAAGGAGTCTACTAAAGGTTCCGGGATATGACAAACCAGTGGAATTTGGAGTTTTAACAAAGTTTGCATATCCTTTGGAAGGGAACCTAGGTgaaattgttgttgccacaactagaattgaaactatgcttggtgacactgctattgccgTACATCCTAATGATGACAGATATAGCCATTTTCATGGAAAATATGCTATTCATCCATTTAATGGTAGAAAACTTCCTATAATTTGTGATGCTATTCTTGTTGATCCAAAGTTCGGGACAGGTGCTGTTAAGATTACACCTGCCCATGATCCAAATGATTTTGAGGTGGGAAAACGTCACAACCTTGAATTCATTAATGTTTTCACGGATGACGGAAAAATAAATTCCAATGGTGGCTCTGATTTTTTGGGCATGCTGCGGTTTAAAGCTCGAGAGGCAGTAGCAGAAGCATTACAAAAGAAGGACCTTTATAGAGGATCTGAAAACAATGAGATGCGCCTTGGGGTTTGTTCAAGAAGCAATGATGTTGTGGAGCCCATGATAAAACCCCAGTGGTATGTCAATTGCAATGATTTGGCAAAACAAGCTCTTCATGCTGCTGTGGATGAGGAAAACAAAAGGATAGAGATTATTCCAAAACAATATTTGGCTGATTGGAAGAGATGGCTGGAAAACATACGTGATTGGTGCATTTCACGACAGCTATGGTGGGGTCACCAAATACCTGCATGGTATGTCACTTTGGAGGATGATGTTCTTCGGGAATTTGGTGCTTATAATGATCATTGGGTAGTGGCAAAAAATGAAGAGGAAGCTCAGAAAGAGGCTAGCCAGAGGTATAATGGAAAGCAGTTTCATTTAAGCCAGGATCCTGACGTTCTTGATACATGGTTTTCTTCTGGTCTGTTCCCATTATCTGTGCTGGGATGGCCTGATGACACAGAGGACCTGAAGACATTCTATCCAACTTCTGTTCTGGAAACTGGCCATGATATCCTCTTTTTCTGGGTTGCCCGAATGGTGATGCAAGGATTGAAGTTGGGTGGTGATGTGCCTTTTACGAAGATTTATTTGCATCCTATGGTTCGTGATGCACATGGACGCAAGATGTCCAAGTCCTTAGGGAATGTTATTGATCCCATTGAAGTGATAAATGGGATATCACTTGAAGGTCTACATAAGAGGTTAGAGGCTGGTAACCTGGACCCCAGAGAACTAGCCACTGCTTTAGAGGGTCAGAAGAAGGACTTTCCAAATGGTATTGATGAATGTGGTGCCGATGCTCTCCGTTTTGCACTGGTCTCGTACACAGCTCAGTCTGACAAAATTAACCTAGATATTCAAAGGGTGGTTGGGTATCGCCAATGGTGTAATAAACTGTGGAATGCAGTACGATTTGCTATGAGCAAGCTTGGGGATGATTATATCCCTCCTGCTAATTTGATTCCAGAGGTTCTCCCATTTAGCTGCCAGTGGATACTCTCAGTGTTAAATAAAACCATATCCAAGACAGTGAATTCACTTGAATCATTTGATTTCTCACAAGCTACCACTGCTGTGTATTCTTGGTGGCAGTATCAATTGTGTGATGTATTTATCGAAGTGATTAAGCCTTACTTTACTGGTAATGATCCTAAGTTTGCTTCCAAAAGACGCTTTGCACAAGATACTTTGTGGTTTTGTCTGGACAATGGCCTTCGATTGCTTCATCCCTTTATGCCTTTTGTCACGGAAGAATTATGGCAGCGCCTTCCTTCACCCAGGGAATGTGAGAGAGCAGAATCTATCATGATATGTGATTATCCATCAACTGTAGAGGGCTGGAATAATGAAAGGGTGGAGAATGAGATGGACATTATTGAGTCCACTGTTAAGTCTCTCAGGTCACTGGCAAAAGAAAGTCGTGACAGGCGACCAGCTTTTGTTCTCTGCCGAGCACCGGTGGTTACTGAGATTATTAACAGCCACCAACTAGAGATTGTAACATTAGCTAATCTATCCTCTTTGACAGTAATCACTGAAAGAGATGCTGTTCCATCTGGATATGCTGATGCTGTTGTAAATGAAAACCTTTCTGTTTATTTAGAGCTTCAAGGAACTAATTCTGCAGAAGCAGAGGGGAAGATCAAGAAGATAGATGAGCTGAAAAAGCAAATAGAAAGACTAGAGAAGATTATGAATGCTAAAGGTTATGAAGAAAAGGTTTTGCCAAATATTCGAGAAAAGAACCAGGAGAAGCTAGATTCCCTTAAGTTATTGCTTGGGGAAATGGCTGGTCTGACTCTCTAG 3267 0.4163 MQMKIAGPFSEGFHTVKNRSLLWVRRFHTQNILHCKSSMDSSANNKEKEKVQVQPTPEEDPEKKRKKEEKAREKQLKKEKFLQKQAQQQAQQSSNASTSKKSEKKVVKRGGEGENPEDYVDPETPSGEKKRMARQMAKQYSPTAVEKSWYEWWEESQYFVADANSSKPPFVIVLPPPNVTGALHIGHALTAAIEDTMIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLFREKNLTRHDLGREKFVSEVWEWKHKYGGTILQQLRRLGASLDWSRECFTMDERRSKAVTEAFVRLYKQGLIYRDLRLVNWDCVLRTAISDIEVDYLEIKERSLLKVPGYDKPVEFGVLTKFAYPLEGNLGEIVVATTRIETMLGDTAIAVHPNDDRYSHFHGKYAIHPFNGRKLPIICDAILVDPKFGTGAVKITPAHDPNDFEVGKRHNLEFINVFTDDGKINSNGGSDFLGMLRFKAREAVAEALQKKDLYRGSENNEMRLGVCSRSNDVVEPMIKPQWYVNCNDLAKQALHAAVDEENKRIEIIPKQYLADWKRWLENIRDWCISRQLWWGHQIPAWYVTLEDDVLREFGAYNDHWVVAKNEEEAQKEASQRYNGKQFHLSQDPDVLDTWFSSGLFPLSVLGWPDDTEDLKTFYPTSVLETGHDILFFWVARMVMQGLKLGGDVPFTKIYLHPMVRDAHGRKMSKSLGNVIDPIEVINGISLEGLHKRLEAGNLDPRELATALEGQKKDFPNGIDECGADALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFAMSKLGDDYIPPANLIPEVLPFSCQWILSVLNKTISKTVNSLESFDFSQATTAVYSWWQYQLCDVFIEVIKPYFTGNDPKFASKRRFAQDTLWFCLDNGLRLLHPFMPFVTEELWQRLPSPRECERAESIMICDYPSTVEGWNNERVENEMDIIESTVKSLRSLAKESRDRRPAFVLCRAPVVTEIINSHQLEIVTLANLSSLTVITERDAVPSGYADAVVNENLSVYLELQGTNSAEAEGKIKKIDELKKQIERLEKIMNAKGYEEKVLPNIREKNQEKLDSLKLLLGEMAGLTL 1088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g02267 1088 SUPERFAMILY ValRS/IleRS/LeuRS editing domain 343 493 IPR009008 GO:0002161|GO:0006418
Gma10g02267 1088 Gene3D HUPs 465 696 IPR014729 -
Gma10g02267 1088 MobiDBLite consensus disorder prediction 101 135 - -
Gma10g02267 1088 PRINTS Valyl-tRNA synthetase signature 170 181 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Gma10g02267 1088 PRINTS Valyl-tRNA synthetase signature 381 398 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Gma10g02267 1088 PRINTS Valyl-tRNA synthetase signature 498 511 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Gma10g02267 1088 PRINTS Valyl-tRNA synthetase signature 616 637 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Gma10g02267 1088 PRINTS Valyl-tRNA synthetase signature 647 665 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Gma10g02267 1088 Gene3D - 386 455 IPR009008 GO:0002161|GO:0006418
Gma10g02267 1088 Coils Coil 64 84 - -
Gma10g02267 1088 Pfam tRNA synthetases class I (I, L, M and V) 149 772 IPR002300 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Gma10g02267 1088 Hamap Valine--tRNA ligase [valS]. 136 1087 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Gma10g02267 1088 PANTHER VALYL-TRNA SYNTHETASES 52 1076 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Gma10g02267 1088 MobiDBLite consensus disorder prediction 82 100 - -
Gma10g02267 1088 TIGRFAM valS: valine--tRNA ligase 136 1073 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Gma10g02267 1088 Gene3D HUPs 137 336 IPR014729 -
Gma10g02267 1088 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 783 1028 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Gma10g02267 1088 Coils Coil 936 956 - -
Gma10g02267 1088 MobiDBLite consensus disorder prediction 41 81 - -
Gma10g02267 1088 CDD Anticodon_Ia_Val 771 910 IPR033705 -
Gma10g02267 1088 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 177 188 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Gma10g02267 1088 PANTHER BNAA08G31530D PROTEIN 52 1076 - -
Gma10g02267 1088 Gene3D - 726 961 - -
Gma10g02267 1088 MobiDBLite consensus disorder prediction 38 135 - -
Gma10g02267 1088 CDD ValRS_core 168 771 - -
Gma10g02267 1088 Pfam Anticodon-binding domain of tRNA ligase 817 959 IPR013155 GO:0004812|GO:0006418
Gma10g02267 1088 Coils Coil 1028 1058 - -
Gma10g02267 1088 SUPERFAMILY Nucleotidylyl transferase 135 781 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g02267 Gma-Chr10 50257452 50265755 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g02267 K01873 - gmx:100798111 2051.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02267 10 50257452 50265755 Gma10g02267 10 50257452 50265755 ECH
Gma10g02267 10 50257452 50265755 Gma20g01449 20 41625223 41628115 GST