Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00497 ATGGCTTTGATAACTCTGTTTTCTATTTTATTCTTTATGCTAATGGCCTCTTCAAGCAATGCCTACTGGCCACCTTCACCTGATTACAGGCCAAGTTCCAAATTCAGGCCTGTGAACTTCTATAGAGGGTTTAATAATCTTTGGGGCCCTCAGCACCAAAGCATAGACCAAAATGCATTAACAATATGGCTTGATAGCTCCTCAGGAAGTGGCTTCAAGTCAAATCGACCATTTCGATCCGGTTACTTTGGTGCTTCCATTAAGCTCCATCCTGGCTATACTGCAGGAGTTATAacagctttctatctttctaACAATGAGGCACATCCGGGCTTCCATGATGAAGTGGACATTGAGTTTCTTGGGACAACATTTGGAAAGCCTTATACTTTACAGACCAATGTTTATATAAGAGGGAGTGGGGATGGCACAATTATTGGCAGAGAAATGAAGTTCCACCTTTGGTTTGATCCTACCCAAAACTTTCATCACTATGCTATACTTTGGAGTCCTAAGGAAATAATATTCCTTGTGGATGATATTCCCATAAGGAGGTACCCTAGGAAGAGTGCTGAAACATTTCCACTAAGGCCAATATGGCTTTATGGTTCAATATGGGATGCCTCATCATGGGCAACAGAAGATGGTAAGTACAAGGCTGATTACAGATACCAACCTTTTGTTGCAAAGTACACCAACTTCAGGGCTGGTGGTTGCTCAGCCTATGCCTCTCGTCGGTGCCGCCCGGTCTCGGCCTCGCCATATCGCTCCGGTGGCTTGACCAGACGCCAATATTGGGCCATGAGATGGGTGCAAAAATACCACATGGTCTATAACTATTGCCAAGACCCCAAAAGAGATCACAGACTAACACCTGAGTGTTGGGGGTAA 891 0.4366 MALITLFSILFFMLMASSSNAYWPPSPDYRPSSKFRPVNFYRGFNNLWGPQHQSIDQNALTIWLDSSSGSGFKSNRPFRSGYFGASIKLHPGYTAGVITAFYLSNNEAHPGFHDEVDIEFLGTTFGKPYTLQTNVYIRGSGDGTIIGREMKFHLWFDPTQNFHHYAILWSPKEIIFLVDDIPIRRYPRKSAETFPLRPIWLYGSIWDASSWATEDGKYKADYRYQPFVAKYTNFRAGGCSAYASRRCRPVSASPYRSGGLTRRQYWAMRWVQKYHMVYNYCQDPKRDHRLTPECWG 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00497 296 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 16 231 IPR000757 GO:0004553|GO:0005975
Gma10g00497 296 SUPERFAMILY Concanavalin A-like lectins/glucanases 62 282 IPR013320 -
Gma10g00497 296 Gene3D - 20 294 - -
Gma10g00497 296 PIRSF EndGlu_transf 2 296 IPR016455 GO:0010411|GO:0016762|GO:0042546
Gma10g00497 296 Pfam Glycosyl hydrolases family 16 42 223 IPR000757 GO:0004553|GO:0005975
Gma10g00497 296 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 257 294 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Gma10g00497 296 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 4 295 IPR044791 GO:0004553
Gma10g00497 296 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 4 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00497 Gma-Chr10 4975682 4977758 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00497 1 294 Glycoside Hydrolase AT3G44990 63.946 1.95e-135 383
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00497 K08235 - gmx:100813742 640.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01745 19 46771607 46774162 Gma10g00497 10 4975682 4977758 PCT
Gma03g01694 03 43120084 43122546 Gma10g00497 10 4975682 4977758 PCT
Gma10g00497 10 4975682 4977758 Gma19g01745 19 46771607 46774162 PCT
Gma10g00497 10 4975682 4977758 Gma03g01694 03 43120084 43122546 PCT