Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00390 ATGCCGAACCTCTGCACTGTTAGTTCTAATGCTTCTTCAAACTTCATATTCGGCGTTCAACCTCACAACTTCTACAATTTTGGGTCAAGGAGAACGAGACCTCGGTGCAGGGTCAGCATGTCCTCCTCCGATCCTCAAAACGCCGTCGTTGTGGGGTGTGGATCGGTGACCATGGATTTCTTGGCCACGGTTGCGGCTTACCCTAAGCCGGATGACAAAATCAGAAGCACCAGCTTGAAGgttcaaggaggtggcaatgtcggcaacgccttaacctgccttgctcgcttgggcttaaacccaaggctcatttccaagATTGCTGATGACAGTCAAGGCAGGAGTATATTAGACGAGCTACGAGATGATGGTGTAGATACATCCTTTATTGTGGTGTCTAAGGAGGGAACTTCACCATTTACATATATTATTGTGGACAACCAAACGAAGACCCGCACTTGTATACATACCGCAGGATATCCTCCAATGATACCAGACGAACTGTCAAAATCAAGTTTATTATCTGCATTGGATGGAGCAAAATTTGCTTATTTTGATGGGAGGTTGCCTGATACTGCTCTAGTTGTTGCCCAAGAGgcagttagaaagaatatacccatcttaatagatgcagaaaggccaagggaagggttagacgatctcctaaaattagctgattatgttgtatgctcagcaaagtttccagcaTCATGGACAAAGGCATCAACTGTTCCACAAGCACTTGTTTCTATGCTTTTAAGGTTGCCCAACATAAAATTTGTGATTGTAACTTTGGGGAAAGATGGTTGTATAATGCTGGAGAGAAGTGTTGATGcaggtccttccacggaagaagtggatgtagacagcttattggaatcattggagataaaaagggataagagtgtatccattccaacctgcatatcatcaTCAGTGGCAAAATTGAAGGCAGAGGGGATAGGAACAGTTAGTGGGAAGTTGTATGTTGGAACAGCTGAGAGTATTCCACCATCAGAGCTTGTTGATACCACTGGTGCTGGGGATGCATTTATTGGAGCTGTTATCTATGCTATTTGTGCCAAGTTTACACCAGAGACAATGCTATCCTTTGCTGCTAATGTGGCAGGTGCCAAGTGCAGGGATCTAGGAGCACGAAGTGGTCTTCCTTACCGTGCAGATCCACGCATAGCATCCTTTGTATTGGAGAAATTGAGTAGTTCAGCTTAA 1230 0.3431 MPNLCTVSSNASSNFIFGVQPHNFYNFGSRRTRPRCRVSMSSSDPQNAVVVGCGSVTMDFLATVAAYPKPDDKIRSTSLKVQGGGNVGNALTCLARLGLNPRLISKIADDSQGRSILDELRDDGVDTSFIVVSKEGTSPFTYIIVDNQTKTRTCIHTAGYPPMIPDELSKSSLLSALDGAKFAYFDGRLPDTALVVAQEAVRKNIPILIDAERPREGLDDLLKLADYVVCSAKFPASWTKASTVPQALVSMLLRLPNIKFVIVTLGKDGCIMLERSVDAGPSTEEVDVDSLLESLEIKRDKSVSIPTCISSSVAKLKAEGIGTVSGKLYVGTAESIPPSELVDTTGAGDAFIGAVIYAICAKFTPETMLSFAANVAGAKCRDLGARSGLPYRADPRIASFVLEKLSSSA 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00390 409 Pfam pfkB family carbohydrate kinase 52 276 IPR011611 -
Gma10g00390 409 Pfam pfkB family carbohydrate kinase 328 390 IPR011611 -
Gma10g00390 409 PANTHER PFKB FAMILY CARBOHYDRATE KINASE 37 408 - -
Gma10g00390 409 SUPERFAMILY Ribokinase-like 50 394 IPR029056 -
Gma10g00390 409 CDD ribokinase_group_B 49 391 - -
Gma10g00390 409 Gene3D - 49 387 IPR029056 -
Gma10g00390 409 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 343 356 IPR002173 GO:0016773
Gma10g00390 409 PRINTS Ribokinase signature 79 98 IPR002139 GO:0016301
Gma10g00390 409 PRINTS Ribokinase signature 52 73 IPR002139 GO:0016301
Gma10g00390 409 PRINTS Ribokinase signature 261 272 IPR002139 GO:0016301
Gma10g00390 409 PANTHER PHOSPHOTRANSFERASE SYSTEM TRANSPORT PROTEIN 37 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00390 Gma-Chr10 3692970 3697837 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00390 - - gmx:100802550 790.801
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00390 10 3692970 3697837 Gma13g01091 13 25035685 25040288 GST
Gma19g01615 19 45531576 45533966 Gma10g00390 10 3692970 3697837 PCT
Gma03g01561 03 41837432 41842386 Gma10g00390 10 3692970 3697837 PCT
Gma10g00390 10 3692970 3697837 Gma19g01615 19 45531576 45533966 PCT
Gma10g00390 10 3692970 3697837 Gma03g01561 03 41837432 41842386 PCT