Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01561 ATGGCATGCGTGCTGAAGTTGTTCGCCGTAACCAATGGCAGCGTCTTCAGCCTCCACCTCAACTCACGTCGTCGCTTCCATCGCCGTTTCAATGCCAAAATCAAAATGTCCTCCTCCGACGCCGCGCTTCCTTCTCTTCCCGATAACCGCACCGTCGTCGGGTTCGGAATGACGGCGGTGGATTTCCTGGCTACCGTGGACGGATTTCCGAAACCAGACGACAAGGTCCGAAGCGCTTCGTTGAAGGTTGAAGGAGGCGGCAATGCCGGCAACGCGCTCACCTGCGCTGCTCGGCTCGGCTTGAAGCCGAAGCTGATCTCCAAAGTTGCAGATGACTCGCACGGCTTCGCCATATTGAAGGAGTTAGAAGCCGATGGCGTCGATACTTCCTTCATCGTCGTATCCAAGGGTGGTAGTTCAACATTTTCATATGTACTAGTTGACAACCAAACAAAAACTCGCACAAGTATCTACACCCCTGGAGATCCTCCAATGATGCCAGATGACCTGTCCCAGTCAACATTATTATCTGCATTTGATGGAGCAAGATTAGTTTATTTCGATGGAATGTTTCCTGAAACTGCTCTATTTGTTGCACAAGAGGCAGCTCGCAATAATATTCCTATTTTAGTTGAGGCAGAATCACTGAGGGAAGGGTTGGACGAGCTCTTGAAGCTAGCAGATTTTGTTACATGCTCTGCAAAGTTTCCACAGgcttggacgcaagcaccatctatcccgagtgcactggtttccatgcttttaagattgccaaatatcaactttgtggttgtgactttgggtgaaggtggttgtctaatgttagaaagaagtgcaaatgAGGATTCTGACATAGAAGAAAGGGATGTGGAGAGTTTCTTGGAATTCTTATATAAAGGGAAAGATGATAGCTTGGCTATCCCTACCTGTATACCATCGGCGGTGACAAAATTCAGAGCAAATGGAATAGGGACAATTTGTGGGAGATTCTATATTGGAACAGCTGAGAAGATACCAGATTCTGAGCTGATTGATACAACTGGTGCTGGGGATGCTTTTATTGGAGCCATTATGTATGCTATCTGTGCAAACATGGTACCAGAGAAAATGTTGCCACTTGCTGCTCAAGTGGCAGCTGCCAAGTGTAGAGCTTTGGGAGCTCGAACTGGTCTTCCACGTCGGACAGATCCACATGTGGCATCGTTTTTACACTAG 1215 0.4305 MACVLKLFAVTNGSVFSLHLNSRRRFHRRFNAKIKMSSSDAALPSLPDNRTVVGFGMTAVDFLATVDGFPKPDDKVRSASLKVEGGGNAGNALTCAARLGLKPKLISKVADDSHGFAILKELEADGVDTSFIVVSKGGSSTFSYVLVDNQTKTRTSIYTPGDPPMMPDDLSQSTLLSAFDGARLVYFDGMFPETALFVAQEAARNNIPILVEAESLREGLDELLKLADFVTCSAKFPQAWTQAPSIPSALVSMLLRLPNINFVVVTLGEGGCLMLERSANEDSDIEERDVESFLEFLYKGKDDSLAIPTCIPSAVTKFRANGIGTICGRFYIGTAEKIPDSELIDTTGAGDAFIGAIMYAICANMVPEKMLPLAAQVAAAKCRALGARTGLPRRTDPHVASFLH 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01561 404 CDD ribokinase_group_B 52 393 - -
Gma03g01561 404 SUPERFAMILY Ribokinase-like 50 395 IPR029056 -
Gma03g01561 404 PRINTS Ribokinase signature 54 75 IPR002139 GO:0016301
Gma03g01561 404 PRINTS Ribokinase signature 81 100 IPR002139 GO:0016301
Gma03g01561 404 PRINTS Ribokinase signature 263 274 IPR002139 GO:0016301
Gma03g01561 404 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 345 358 IPR002173 GO:0016773
Gma03g01561 404 PANTHER PFKB FAMILY CARBOHYDRATE KINASE 29 404 - -
Gma03g01561 404 PANTHER PHOSPHOTRANSFERASE SYSTEM TRANSPORT PROTEIN 29 404 - -
Gma03g01561 404 Gene3D - 50 389 IPR029056 -
Gma03g01561 404 Pfam pfkB family carbohydrate kinase 336 392 IPR011611 -
Gma03g01561 404 Pfam pfkB family carbohydrate kinase 51 278 IPR011611 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01561 Gma-Chr3 41837432 41842386 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01561 - - gmx:100792838 795.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01615 19 45531576 45533966 Gma03g01561 03 41837432 41842386 GST
Gma03g01561 03 41837432 41842386 Gma10g00390 10 3692970 3697837 PCT
Gma03g01561 03 41837432 41842386 Gma13g01091 13 25035685 25040288 PCT
Gma10g00390 10 3692970 3697837 Gma03g01561 03 41837432 41842386 PCT
Gma13g01091 13 25035685 25040288 Gma03g01561 03 41837432 41842386 PCT