Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00308 ATGGCAACCATCTCCGCTGCTATCACAACCCCATCGATCACCCGCGCATGTCTAGTGCAAAAACGTTCTCTTGGGTTCTCATCTCCCGTTCTTGGTTTGCCAGCAATGGGTAAGGTGGGAAGAGTGAGTTGCTCCATGGAGGAAAAGCCTTCTTCTGTGAAGGAAAGCAGCTCAAGCATGTTGGGGATGGGGGCATCTTTGATGGCAGCGGCCAGCGCCGCAGCCATGTCAGGCCCAGCCATGGCCTTGGTGGATGAGAGACTTAGCACTGAAGGAACCGGGCTACCCTTCGGCCTCAGCAACAACCTTCTCGGTTGGATCCTGTTCGGCGTCTTCGGACTCATCTGGGCTCTCTATTTTGTCTACACTTCCTCTCTTGAAGAGGATGAAGAGTCAGGACTGTCCCTTTAA 411 0.5377 MATISAAITTPSITRACLVQKRSLGFSSPVLGLPAMGKVGRVSCSMEEKPSSVKESSSSMLGMGASLMAAASAAAMSGPAMALVDERLSTEGTGLPFGLSNNLLGWILFGVFGLIWALYFVYTSSLEEDEESGLSL 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00308 136 PANTHER PHOTOSYSTEM II REACTION CENTER W PROTEIN, CHLOROPLASTIC 1 136 IPR009806 GO:0009507|GO:0009523|GO:0015979
Gma10g00308 136 Pfam Photosystem II reaction centre W protein (PsbW) 1 136 IPR009806 GO:0009507|GO:0009523|GO:0015979
Gma10g00308 136 PANTHER PHOTOSYSTEM II REACTION CENTER W 1 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00308 Gma-Chr10 2851280 2852910 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00308 K02721 - gmx:100305788 181.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00308 10 2851280 2852910 Gma10g00308 10 2851280 2852910 ECH
Gma02g01293 02 15015464 15017256 Gma10g00308 10 2851280 2852910 ECH
Gma10g00308 10 2851280 2852910 Gma02g01293 02 15015464 15017256 GST
Gma19g01524 19 44592780 44594304 Gma10g00308 10 2851280 2852910 PCT
Gma03g01464 03 40883168 40884589 Gma10g00308 10 2851280 2852910 PCT
Gma10g00308 10 2851280 2852910 Gma19g01524 19 44592780 44594304 PCT
Gma10g00308 10 2851280 2852910 Gma03g01464 03 40883168 40884589 PCT