Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00112 ATGAATTACGCCCGTCTGATTTCCGGCGGAGGATGGCTTCTCCGGCGACTGTGCACGGCGGCTGAGACTCCCGCGAAAAAGCCAAACCTCTATCGAATGTTATCGGCGCTGGACATCACCGGAGGCACCGTGTCGCAAACGTTGGACCAATATATAATGGAAGGCAAAGTCATCAAAAAACCAGAACTCGAGCGGTGCGTCGAGCAGCTCCGAAAGTATCGCCGATTCCAGCACGCACTCGAGATAATAGAATGGATGGAGATAAGAAAAGTTAATTTTTCCTGGAGTAACTATGCTGTGCAATTAGATCTTGTGTCCAAAACCAAAGGGGTGGATGCTGCGGAGAATTTTTTCGGCGGTCTTCCTCCTCCAGCCAAGAACAGGTATACCTACGGTGCTCTTCTGAACTGTTACTGTAAGGAACTAATGAAAGACAAGGCATTGAGTCATTTTGACACCATGGATGAATTGGGTTATGTCACTAATCTGGCTTTCAACAATGTCATGACTCTGTTTATGAAACTGGGTGAACCCCAGAAAGTGCCTCAGCTAGTGGAGCTTATGAAAAAGAGGACCATTCCCATGTCCCCATTCACATATCATATCTGGATGAACAGCTGCGCCTCTTCAAACGATCTTGGTGGGGCGGAGAGAGTCTATGAGGAGATGAAAACTGAAAATGAAGGCCAAATTGGTTGGCACACTTACAGCAACCTTGCTTCTATTTATGTAAAGTTTAAGGACTTTGAGAAAGCTGAGATGATGCTTAAGATGCTGGAGGAACAAGTGAAGCCGAAGCAGCGTGATGCTTACCATTGCTTGCTTGGCCTTTATGCAGGGACTGGTAATCTTGGGGAGGTTCATAGAGTGTGGGATTCCCTCAAGTCTGTCTCCCCTGTCACCAACTTCAGCTATCTTGTTATGCTTAGTACCCTCCGAAGGCTTAATGATATGGAGGGGTTAACAAAATGCTTTAAGGAGTGGGAGGCAAGTTGTGTTAGCTATGATGCGAGGTTGGTTAGTGTCTGTGTTAGTGCTCACTTGAATCAGAACATGTTGGAAGAAGCTGAATTGGTATTTGAGGAGGCTAGCAGGAGGAGCAAAGGGCCTTTCTTTAGGGTTCGGGAAGAGTTCATGAAGTTTTTCTTGAAGAAACATGAGTTGGATGCTGCTGTGAGGCACTTGGAGGCAGCGCTTTCAGAAGTCAAGGGTGATAAATGGCGTCCTTCACCACAAGTTGTTGGGGCTTTTCTCAAGTACTATGAAGAAGAGACGGATGTGGATGGTGTTGATGAGTTGTCCAAGATTCTCAAGGCTAACAATTTTGATGATTCCTGGATTAAAAGTTGCATTACTGCATCCAAATCGTCTCCTGAAATTGATCCAGGAATGAAGGAAGATTCTCAAGTCTACCATGCGCAGGAGAACTAG 1431 0.4591 MNYARLISGGGWLLRRLCTAAETPAKKPNLYRMLSALDITGGTVSQTLDQYIMEGKVIKKPELERCVEQLRKYRRFQHALEIIEWMEIRKVNFSWSNYAVQLDLVSKTKGVDAAENFFGGLPPPAKNRYTYGALLNCYCKELMKDKALSHFDTMDELGYVTNLAFNNVMTLFMKLGEPQKVPQLVELMKKRTIPMSPFTYHIWMNSCASSNDLGGAERVYEEMKTENEGQIGWHTYSNLASIYVKFKDFEKAEMMLKMLEEQVKPKQRDAYHCLLGLYAGTGNLGEVHRVWDSLKSVSPVTNFSYLVMLSTLRRLNDMEGLTKCFKEWEASCVSYDARLVSVCVSAHLNQNMLEEAELVFEEASRRSKGPFFRVREEFMKFFLKKHELDAAVRHLEAALSEVKGDKWRPSPQVVGAFLKYYEEETDVDGVDELSKILKANNFDDSWIKSCITASKSSPEIDPGMKEDSQVYHAQEN 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00112 476 Pfam PPR repeat 129 158 IPR002885 -
Gma10g00112 476 Pfam PPR repeat 235 261 IPR002885 -
Gma10g00112 476 Pfam PPR repeat 164 191 IPR002885 -
Gma10g00112 476 Pfam PPR repeat 198 226 IPR002885 -
Gma10g00112 476 MobiDBLite consensus disorder prediction 460 476 - -
Gma10g00112 476 MobiDBLite consensus disorder prediction 455 476 - -
Gma10g00112 476 SUPERFAMILY TPR-like 194 299 IPR011990 GO:0005515
Gma10g00112 476 PANTHER OS01G0301500 PROTEIN 3 468 - -
Gma10g00112 476 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 127 161 IPR002885 -
Gma10g00112 476 PANTHER OS12G0527900 PROTEIN 3 468 - -
Gma10g00112 476 TIGRFAM PPR: pentatricopeptide repeat domain 198 226 IPR002885 -
Gma10g00112 476 TIGRFAM PPR: pentatricopeptide repeat domain 129 160 IPR002885 -
Gma10g00112 476 Gene3D Tetratricopeptide repeat domain 60 226 IPR011990 GO:0005515
Gma10g00112 476 Gene3D Tetratricopeptide repeat domain 233 457 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00112 Gma-Chr10 1123421 1125087 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00112 30 438 EF-hand Containing Proteins AT1G02150 35.109 3.73e-78 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00112 - - gmx:100781679 962.985
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00112 10 1123421 1125087 Gma10g00112 10 1123421 1125087 ECH
Gma02g00106 02 1087989 1089514 Gma10g00112 10 1123421 1125087 ECH
Gma10g00112 10 1123421 1125087 Gma02g00106 02 1087989 1089514 GST
Gma10g00112 10 1123421 1125087 Gma19g01866 19 47861935 47862942 PCT
Gma10g00112 10 1123421 1125087 Gma03g01825 03 44270274 44271281 PCT