Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g00106 ATGAATTACTCCCGTCTGACTTCCGGCGGAGGATGGCTTCTCCGGCGACTGTGCACTGCGGCTGAGACTCCCGCGAAAAAGCCAAACCTATATCGAATGTTATCGGCGCTGGACATCACCGGAGGTACCGTGTCGCAAACGTTGGACCAATATATAATGGAAGGCAAAGTCATCAAAAAACAAGAACTCGAACGATGCGTGGAGCAGCTCCGAAAGTATCGCCGATTCCAGCGCGCACTCGAGATAATAGAATGGATGCAGATGAGGAAAGTTAATTTTTCCTGGAATAACTATGCAGTGCAGTTAGATCTTGTGTCCAAAACCAAAGGGGTGGTTGCAGCTGAGAATTTCTTCAGCGGTCTTCCTCCTGCAGCCAAGAACATGTATACCTACGGTGCTCTTCTGAACTGTTACTGTAAGGAACTAATGAAAGACAAGGCATTGAGTCATTTTGACAGAATGAATGAACTGGGTTATGTCACTAATCTGGCTTTCAACAATGTCATGACTCTGTTTATGAAACTGGGTGAACCCGAGAAAGTGGCTCAGCTGGTGGAGCTTATGAAGCAGAGGCGCATTCCCATGTCTGCATTCACATATTATATCTGGATGAACAGCTGCGCCTCTTTGAACGATCTTGATGGGGTGGAGAGAATCTACGAGGAGATGAAAACTGAAGATGAAGACCAAATTGGTTGGCAGACTTACAGCAACCTTGCTTCTATTTATGTTAAGTTTAAGGACTTTGAGAAAGCTGAGATGATGCTTAAGATGCTGGAAAAACAAGTGAAGCCGAAACAGCGTGATGCTTACCATTGCTTGCTTGGCCTTTATGCAGGGACCGGTAATCTTGGGGAGGTTCATAGAGTGTGGAATTCCCTCAAGTCTGTCTCCCTTGTCACCAACTTCAGCTATCTTGTTATGCTTAGTACCCTCCGAAGGCTTAATGATATAGAGGGGTTAACAAAATGCTTTAAGGAGTGGGAGGCTAGTTGTGTTAGCTATGATGTGAGGTTGGTTAGTGTCTGTGTTAGTGCTCACTTGAATCAGAACAAGCTGGAAGAAGCTGAATCGGTATTTGAGGAGGCTAGCAGGAGGAGCAAAGGGCCTTTCTTTAGGGTTCGGGAAGAGTTCATGAAGTTTTTCTTGAAGAAGCATCAGTTGGATGCTGCTGTGAGGTACTTGGAGGCAGCGCTTTCAGAAGTCAAGGGTGGTAAATGGCGTCCTTCACCACAAGTTCTTGGGGCTTTTCTGAAGTACTATGAAGAAGAGACGGATGTGGATGGTGTTGATGAGTTGTCCAAGATTCTCAAGGCTAACAATTTCGATGATTCCTGGATTAAAAATCACATTACTGCGTCCGAATTGTCTCCTGAAATTGATCCAGGATTCAAGGAAGATTCTCGAGTCTACCATGCACAGGAGAACTAG 1431 0.4535 MNYSRLTSGGGWLLRRLCTAAETPAKKPNLYRMLSALDITGGTVSQTLDQYIMEGKVIKKQELERCVEQLRKYRRFQRALEIIEWMQMRKVNFSWNNYAVQLDLVSKTKGVVAAENFFSGLPPAAKNMYTYGALLNCYCKELMKDKALSHFDRMNELGYVTNLAFNNVMTLFMKLGEPEKVAQLVELMKQRRIPMSAFTYYIWMNSCASLNDLDGVERIYEEMKTEDEDQIGWQTYSNLASIYVKFKDFEKAEMMLKMLEKQVKPKQRDAYHCLLGLYAGTGNLGEVHRVWNSLKSVSLVTNFSYLVMLSTLRRLNDIEGLTKCFKEWEASCVSYDVRLVSVCVSAHLNQNKLEEAESVFEEASRRSKGPFFRVREEFMKFFLKKHQLDAAVRYLEAALSEVKGGKWRPSPQVLGAFLKYYEEETDVDGVDELSKILKANNFDDSWIKNHITASELSPEIDPGFKEDSRVYHAQEN 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g00106 476 PANTHER OS12G0527900 PROTEIN 3 468 - -
Gma02g00106 476 PANTHER OS01G0301500 PROTEIN 3 468 - -
Gma02g00106 476 Gene3D Tetratricopeptide repeat domain 301 455 IPR011990 GO:0005515
Gma02g00106 476 Gene3D Tetratricopeptide repeat domain 59 232 IPR011990 GO:0005515
Gma02g00106 476 Gene3D Tetratricopeptide repeat domain 233 300 IPR011990 GO:0005515
Gma02g00106 476 SUPERFAMILY TPR-like 194 288 IPR011990 GO:0005515
Gma02g00106 476 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 127 161 IPR002885 -
Gma02g00106 476 SUPERFAMILY TPR-like 126 401 IPR011990 GO:0005515
Gma02g00106 476 TIGRFAM PPR: pentatricopeptide repeat domain 129 160 IPR002885 -
Gma02g00106 476 TIGRFAM PPR: pentatricopeptide repeat domain 198 226 IPR002885 -
Gma02g00106 476 Pfam PPR repeat 164 193 IPR002885 -
Gma02g00106 476 Pfam PPR repeat 129 158 IPR002885 -
Gma02g00106 476 Pfam PPR repeat 235 261 IPR002885 -
Gma02g00106 476 Pfam PPR repeat 198 226 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g00106 Gma-Chr2 1087989 1089514 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g00106 30 438 EF-hand Containing Proteins AT1G02150 34.867 6.08e-79 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g00106 - - gmx:100791769 957.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g00106 02 1087989 1089514 Gma02g00106 02 1087989 1089514 ECH
Gma02g00106 02 1087989 1089514 Gma10g00112 10 1123421 1125087 ECH
Gma10g00112 10 1123421 1125087 Gma02g00106 02 1087989 1089514 GST
Gma02g00106 02 1087989 1089514 Gma19g01866 19 47861935 47862942 PCT
Gma02g00106 02 1087989 1089514 Gma03g01825 03 44270274 44271281 PCT