Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g02538 ATGGCAAGCTTAAAGGTTGCATGTGTGGTTTTGATGTGCATGGCTGTGATGAGTGCACCAATGATGGTGCAAGCCGTGTCATGCAATGATGTTTCTGTGAACCTAGCACCGTGCCTATCTTACCTGATGCAGGGTGGAGATGTTCCAGAATCGTGCTGTAGCGGAGTGAGGAACATTCTGGGTTCTGCCAGCACCACCTTTGACAAACAAACCGTGTGCAAATGTCTTCAGCAAGCTGCTAATAACTATGGCATCAACGACGAATACGCTCAGGCACTCCCCGCCCGCTGCAATGTCAGCGTCCCTTACAAGATCAGCCGATCCACCAACTGCGACTCCATCAAGTTCTAA 351 0.5014 MASLKVACVVLMCMAVMSAPMMVQAVSCNDVSVNLAPCLSYLMQGGDVPESCCSGVRNILGSASTTFDKQTVCKCLQQAANNYGINDEYAQALPARCNVSVPYKISRSTNCDSIKF 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g02538 116 PANTHER - 1 113 IPR000528 GO:0006869|GO:0008289
Gma09g02538 116 SMART aai_6 28 111 IPR016140 -
Gma09g02538 116 PANTHER NON-SPECIFIC LIPID-TRANSFER PROTEIN 1 113 - -
Gma09g02538 116 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 27 114 IPR036312 -
Gma09g02538 116 Pfam Protease inhibitor/seed storage/LTP family 28 111 IPR016140 -
Gma09g02538 116 Gene3D - 25 116 IPR036312 -
Gma09g02538 116 PRINTS Plant phospholipid transfer protein signature 27 43 IPR000528 GO:0006869|GO:0008289
Gma09g02538 116 PRINTS Plant phospholipid transfer protein signature 47 61 IPR000528 GO:0006869|GO:0008289
Gma09g02538 116 PRINTS Plant phospholipid transfer protein signature 68 83 IPR000528 GO:0006869|GO:0008289
Gma09g02538 116 PRINTS Plant phospholipid transfer protein signature 84 101 IPR000528 GO:0006869|GO:0008289
Gma09g02538 116 PRINTS Plant phospholipid transfer protein signature 102 113 IPR000528 GO:0006869|GO:0008289
Gma09g02538 116 CDD nsLTP1 26 112 - -
Gma09g02538 116 ProSitePatterns Plant lipid transfer proteins signature. 93 114 IPR000528 GO:0006869|GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g02538 Gma-Chr9 50674443 50675646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g02538 4 115 Acyl Lipid Metabolism Gene Families AT2G38540 44.737 1.39e-30 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g02538 - - gmx:100306706 228.794
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma09g02538 09 50674443 50675646 Gma01g01330 01 46592721 46603108 PCT
Gma01g01330 01 46592721 46603108 Gma09g02538 09 50674443 50675646 PCT