Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g02504 ATGGGCACAACAAAGCTGAGTCTTTTGTTGTGTGTTGGGGTTTTGCTGTTGGGGTGTTGTGTCGGTAGGTTTGTGGTGGAGAAGAACAGTTTGAAGGTGACTTCTCCGAAATCGTTGAAGGGTACGTATGAATGTGCAATTGGGAATTTTGGGGTTCCCAAGTATGGAGGAACGTTGGTTGGTTCTGTTCTGTACCCAAAGGTGAATCAGAAAGGGTGCACCAACTTCAGTGATGTCAATTTTCAGTCCAAGCCAGGAGGGTTTCCCACTTTTCTTCTTGTTGATCGTGGAGATTGCTACTTCACTTTGAAGGCGTGGAATGCACAGAATGGTGGAGCAGCAGCTATTCTTGTAGCTGATGACAAGGCAGAAACGTTGATCACTATGGACACTCCTGAAGAAGGGAAAGCAAATGATGATTATGTGGACAAGATTAGTATTCCTTCTGCTCTTATCAGCAAATCCCTGGGGGATAGCATCAAGCAGGCTCTCTCTGACGGGGAGATGGTTAATATAAATCTTGATTGGAGGGAGTCTCTTCCGCATCCTGATGATAGAGTTGAGTACGAGTTATGGACAAATAGCAACGATGAGTGTGGGCCAAAGTGTGACAGTCTAATTAATTTTCTGAAGGACTTTAAAGGGGTAGCTCAGCAGCTGGAGAAGAAAGGGTTCACTCAATTTACCCCTCGCTATATAACTTGGTTTTGTCCTGAAGCATTTCTCTTGAGCAAGCAGTGTAAATCTCAGTGCATAAACAATGGAAGGTACTGTGCTCCAGATCCTGAGCAAGATTTCAGTAGAGGATATGATGGCAAAGATGTTGTTGTTCAAAACTTACGCCAAGCTTGCTTCTATAAAGTAGCAAATGAAAGTGGAAAGCCTTGGCAATGGTGGGACTATGTTACTGACTTTGCAATTCGTTGCCCCATGAAAGAGAATAAGTACTCAGAAGAATGCTCAGATCAAGTTATTAAATCTCTTGGTGCTGATCTGAAGAAGATTAAAGACTGCGTTGGAGATCCCCATGCAGATGTAGAAAATCCTGTTCTTAAGGCTGAACAGGATGCACAGATTGGTCAAGGCTCTCGTGGTGATGTTACTATACTGCCTACTCTTGTTATAAACAACAGACAGTATAGAGGTAAGTTGTCAAGACCTTCTGTTCTCAAGGCAATCTGTTCAGGCTACCTAGAGACCACTGAACCATCAATTTGCTTAACTTCAGACCTGGAAACAAATGAGTGTTTGGAAAACAATGGTGGTTGTTGGCAGGACAAATCTTCTAACATTACTGCATGCAGGGACACTTTCCGAGGAAGAGTATGTGAATGCCCTATTGTTCAAAATGTGAAGTTTTTTGGAGATGGATATACCCACTGTGAAGCTTCAGGATCCCTGAGTTGTGAATTCAACAATGGTGGTTGTTGGAAGGGAGCCCAAGGTGGAAGGGCTTACTCGGCTTGTCTTGATGACTATAGAAAAGGTTGTACATGTCCACCTGGGTTCAGAGGTGATGGAGTCCAGTCATGTGAAGATATCGATGAGTGCAACGAGAAAACATCCTGTCAATGCCCAGGTTGCAAATGCAAAAACACCTGGGGGAGTTACGAGTGCAAATGCAAAAGTGGTTTGTTCTACTCACGAGAAAATGACACGTGTTTTGGTGAATATTCTGCTTCAGTGTTGAATATCTGGGTGATTATCCTCGTTTTGGTTGTTGCTGTTGCTGGAGGATATGCATTTTACAAGTACAGAATCCAGAGATATATGGATTCGGAGATACGTACAATTATGGCCCAATACATGCCTTTGGATAGTCAACCTGATGTCTCTAATCAAGTCCATCACAATATCTAG 1860 0.4312 MGTTKLSLLLCVGVLLLGCCVGRFVVEKNSLKVTSPKSLKGTYECAIGNFGVPKYGGTLVGSVLYPKVNQKGCTNFSDVNFQSKPGGFPTFLLVDRGDCYFTLKAWNAQNGGAAAILVADDKAETLITMDTPEEGKANDDYVDKISIPSALISKSLGDSIKQALSDGEMVNINLDWRESLPHPDDRVEYELWTNSNDECGPKCDSLINFLKDFKGVAQQLEKKGFTQFTPRYITWFCPEAFLLSKQCKSQCINNGRYCAPDPEQDFSRGYDGKDVVVQNLRQACFYKVANESGKPWQWWDYVTDFAIRCPMKENKYSEECSDQVIKSLGADLKKIKDCVGDPHADVENPVLKAEQDAQIGQGSRGDVTILPTLVINNRQYRGKLSRPSVLKAICSGYLETTEPSICLTSDLETNECLENNGGCWQDKSSNITACRDTFRGRVCECPIVQNVKFFGDGYTHCEASGSLSCEFNNGGCWKGAQGGRAYSACLDDYRKGCTCPPGFRGDGVQSCEDIDECNEKTSCQCPGCKCKNTWGSYECKCKSGLFYSRENDTCFGEYSASVLNIWVIILVLVVAVAGGYAFYKYRIQRYMDSEIRTIMAQYMPLDSQPDVSNQVHHNI 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g02504 619 Pfam PA domain 61 160 IPR003137 -
Gma09g02504 619 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Gma09g02504 619 SMART egfca_6 513 555 IPR001881 GO:0005509
Gma09g02504 619 Gene3D Laminin 467 551 - -
Gma09g02504 619 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 9 598 - -
Gma09g02504 619 SUPERFAMILY PA domain 91 169 IPR046450 -
Gma09g02504 619 ProSitePatterns Calcium-binding EGF-like domain signature. 513 539 IPR018097 GO:0005509
Gma09g02504 619 CDD EGF_CA 513 544 - -
Gma09g02504 619 Gene3D Laminin 407 451 - -
Gma09g02504 619 PANTHER EGF-LIKE CALCIUM-BINDING DOMAIN, PA DOMAIN, THIOREDOXIN-LIKE PROTEIN-RELATED 9 598 - -
Gma09g02504 619 Gene3D - 21 183 - -
Gma09g02504 619 Pfam Complement Clr-like EGF-like 497 516 IPR026823 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g02504 Gma-Chr9 50355811 50361873 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g02504 5 619 Miscellaneous Gene Families AT3G52850 71.543 0.0 930
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g02504 - - gmx:100806422 1261.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma09g02504 09 50355811 50361873 Gma07g00983 07 10970080 10975552 PCT
Gma07g00983 07 10970080 10975552 Gma09g02504 09 50355811 50361873 PCT