Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g01899 ATGTGTCTTTCACTCTCTTCACCAGCGATGGCCGCAGAGGAGCCATTGGATGCTTCCCCCTCGCCGAATCTGTTTTCCGAAACCCTAAGTGCCGCCGAATTGGTCGCCGATTTGGCCGGTTATTACGCTCAGTCACCGACAGGCGGCGGTTCTACTCTTCCGGAGGATTCCGATGAGGACACGGCGGCAGACGATACCGGCGTGCCTTCCTCGTTCCGGCAGCTCAACCACGATGACTCGTCTTCGCTGTGGTCGTCGGCGTTGGGTTCCAATTCGCGCGTCTCTTCGGTGGCGCCGGAATCGTGGATTGCTGCACAAGGAAATTGGCTCTTACCTGAAACTAAAGGTTCAGACGGTGCTGAACCCGCCTCTGAAGCTGTGCCTTCTAAGATGGGAGCAGGGCTTCTGAATCTTGGCAATACTTGCTTTCTCAACGCTATTCTGCAATGCTTTACGCATACAGTGCCTCTGGTGCAGGGTCTTCGTTCAAGCACTCATCTTATCCCTTGTTCTGGTCATAAGGATGGGTTCTGTGTCATTTGTGCTCTTCGTATCCATGTTGAACGTTCCTTAGTGGCTCCAGGAGGGACACTTTCACCCTTGAAATTTGTGAACAATTTGAACTATTTTTCTTCTGATTTTAGAAGATATCAGCAGGAGGATGCCCATGAATTCATGCAGTGTGCCTTAGATAAACTGGAAAGATGTTTCCTAGATTTGAAGAAGAGTAATTTAAATTTTGAAGATGATAATCTTGTAGAGAAAGTTTTTGGAGGTCGTTTCATTAGCAAACTTCAATGTTCTACTTGTGGCCACACTTCCAACACTTTTGAGCCACTCATTGATATGAGTTTAGAGATAGATAATGTAGATTCTCTTCCAAGTGCTCTGGAATCTTTTACTAAGGTGGAAAACATTGATGAAAACTTTAGATGTGATAACTGCAAGGAAGAAGTGTCCATGGAGAAGCAGCTTATGTTGGATCAGACACCATCAGTTGCAGCATTGCATTTAAAGAGATTTAAGACCAATGGGATCCTTGTTGAAAAGATTGATAAGCATATTGATTTCCCATTGGAGTTAGACTTGCAGCCTTACACCATTAAAGTTATGGAAGACCTAGTGGCTGAAAATGATGTGCCGTTGAAATATGATTTATATGCCATTGTTGTGCATACTGGACTTTCATCTACCTCAGGGCATTACTTCTGCTTTGTTCGCTCTGCTCCAGACACATGGCATAAGTTGGATGATTCAATGGTTACTAAGGTGTCGGTAGACTCTGTACTGTCTCAGGAAGCGTACATATTATTTTATGCGCGACAGGGTACTCCATGGTTTTCAAGTATTATGGAAGAGAAAACACAATGTTTGGATCCGAATATTATGACTACATCTCCTAAGTCTGTTTTAGACGTTGGTGACAACATGTCTAAATCAAATCCTATTTTACTTCCCAATATTGAAAGAGGTGTGGCTGATGTATCCAAAGAATATTCTGAGCCTCGCTTTGATTATTATTGTCAAGAAGATCACAATTTTCTTGAAATAAATGATACTGAAGATGCtactcatggctttggacagttgctctctggatcaaatcaggtaatttttgattcgaatggctctaaagatgttgatgtccaaaagctgtttagtaacaggggacataatgataatactcttggctgtggacaatttccctctgggtcaaatcaggaaagtgttgatttgaatagctcaaaagatgttgatgctcaaaagctgtttaggaacagAACCACCTTGGATGATAGTGCCATGCTTGACATGGGAAATTCATATATTGAGAATAGTAGTCTTGATAATAGCAACCGTCAGGAAGGTGGTGATTTTAGAGAGAATGCTGGTTTCCATTCTTTAACTCCGCCTAACTCGCCCCCTGATGATGCTTCAGATAAGTTCCACAACTCACGTGGTAATTTGAAGAGGGAGAATCTTCGGAGCTGTAAAAGATCATCAAACAAGTTAACTGGGGTTTCTGAAGAAAGACGAGAAGCTGTGAAATATCTTTGCAAGAATCGTTCAAGGAGGGGGTTACTTTTGAAATTTGTTGCTTCGAACAAAGTTCTGGACAAGAAGAGAAAAAAGATGGATTCTTCGCAGTGTAAGAAAAGCACCAAAAAATCAAACCATACATCTGTCAGCCCCCCTGTGGCAGCTGGGAGTTCACAGTGA 2220 0.3896 MCLSLSSPAMAAEEPLDASPSPNLFSETLSAAELVADLAGYYAQSPTGGGSTLPEDSDEDTAADDTGVPSSFRQLNHDDSSSLWSSALGSNSRVSSVAPESWIAAQGNWLLPETKGSDGAEPASEAVPSKMGAGLLNLGNTCFLNAILQCFTHTVPLVQGLRSSTHLIPCSGHKDGFCVICALRIHVERSLVAPGGTLSPLKFVNNLNYFSSDFRRYQQEDAHEFMQCALDKLERCFLDLKKSNLNFEDDNLVEKVFGGRFISKLQCSTCGHTSNTFEPLIDMSLEIDNVDSLPSALESFTKVENIDENFRCDNCKEEVSMEKQLMLDQTPSVAALHLKRFKTNGILVEKIDKHIDFPLELDLQPYTIKVMEDLVAENDVPLKYDLYAIVVHTGLSSTSGHYFCFVRSAPDTWHKLDDSMVTKVSVDSVLSQEAYILFYARQGTPWFSSIMEEKTQCLDPNIMTTSPKSVLDVGDNMSKSNPILLPNIERGVADVSKEYSEPRFDYYCQEDHNFLEINDTEDATHGFGQLLSGSNQVIFDSNGSKDVDVQKLFSNRGHNDNTLGCGQFPSGSNQESVDLNSSKDVDAQKLFRNRTTLDDSAMLDMGNSYIENSSLDNSNRQEGGDFRENAGFHSLTPPNSPPDDASDKFHNSRGNLKRENLRSCKRSSNKLTGVSEERREAVKYLCKNRSRRGLLLKFVASNKVLDKKRKKMDSSQCKKSTKKSNHTSVSPPVAAGSSQ 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g01899 739 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 134 149 IPR018200 GO:0004843|GO:0006511
Gma09g01899 739 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 133 442 IPR028889 -
Gma09g01899 739 MobiDBLite consensus disorder prediction 1 24 - -
Gma09g01899 739 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 20 127 475 - -
Gma09g01899 739 MobiDBLite consensus disorder prediction 706 720 - -
Gma09g01899 739 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 384 402 IPR018200 GO:0004843|GO:0006511
Gma09g01899 739 Gene3D Cysteine proteinases 129 447 - -
Gma09g01899 739 MobiDBLite consensus disorder prediction 706 739 - -
Gma09g01899 739 MobiDBLite consensus disorder prediction 653 678 - -
Gma09g01899 739 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 127 475 - -
Gma09g01899 739 SUPERFAMILY Cysteine proteinases 132 441 IPR038765 -
Gma09g01899 739 MobiDBLite consensus disorder prediction 721 739 - -
Gma09g01899 739 Pfam Ubiquitin carboxyl-terminal hydrolase 134 439 IPR001394 GO:0004843|GO:0016579
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g01899 Gma-Chr9 44610716 44614718 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g01899 128 459 Miscellaneous Gene Families AT4G31670 34.006 3.23e-53 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g01899 K11855 - gmx:100808015 1471.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma09g01899 09 44610716 44614718 Gma09g01899 09 44610716 44614718 ECH
Gma01g00166 01 1785054 1788754 Gma09g01899 09 44610716 44614718 GST