Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00166 ATGTGTCTCTCACTCTCTTCACCAGCTATGGCATCCGAGGAGCCAATGGATGCTCCCCCCGCGCCGAATCTGCTTTCCGAAACCCTAAGTGCCGCCGAATTGGTCGCCGATTTGGGCGGTGATTACGCTCTGTTCCCGCCCGGCGGCGGTTCTACCGAGTTCCGGCAGCTCGACGACGACGTCTCGTCTTCGCTTTGGTCGTCGGCGTTGGTTTCGAATTCGCGCGTCTCCGCAGTGGCGCCGGAATCGTGGATTGCTCCACAAGGAAATTGGCTCTTACCTGAAAATGAAGGTTCAGACAATGCTGAATCTGCCTCTGAAGTCGTGCCTTCTAAGATGGGAGCAGGGCTTGTGAATCTTGGCAATACTTGCTTTCTCAATGCTATTCTGCAATGCTTTACGCATACAGTGCCTCTGGTGCAGGGTCTTCGTTCCAGCACTCATCCTATCCCTTGTTCTGGTCATAAGGATGGGTTCTGTGTCATTTGTGCTCTTCGTATCCATGTTGAACGTTCCTTAGCGGCTTCAGGAGGGACATTTTCACCCTTGGAATTTGTGAACAATTTGAAATATTTTTCTTCTGATTTTAGAAGATACCAGCAGGAAGATGCCCATGAATTTATGCAGTGTACCTTGGATAAACTGGAAAGATGTTTCCTAGGTTTGAAGAAGAGTAATTTAAATTTTGAAGATGTTAATCTTGTAGAGAAAGTATTTGGAGGTCGTCTCATTAGCAAACTTCAATGTTCTACTTGTGACCACACTTCCAACACTTTTGAGCCACTTATTGATATGAGTTTAGAGATAGATAATGTAGATTCTCTTCCAAGTGCTCTGGAATCTTTTACTAAGGTGGAAAACATTGATGATAACCTTCAATGTGATAACTGCAAGGAAGAAGTGTCCATGGAGAAGCAGCTTATGTTGGATCAGACACCATCAGTTGCTGCATTTCATTTAAAGAGATTTAAGACAGATGGGATCCTTGTTGAAAAGATTGATAAGCATATTGATTTCCCATTGGAGTTAGACTTGCAGCCTTACACCATTAAAGTTATGGAAGACCCAGGGGCTGAAAATGATGTACCATTGAAATATGATTTATATGCCATTGTTGTGCATACTGGACTTTCTTCTACTTCAGGGCATTACTTCTGCTTTGTTCGCTCAGCTCCAGACACATGGCATAAGTTGGATGATTCAATGGTTACTGAGGTCTCAGTAGAAACAGTACTGTCTCAGGAAGCATACATATTGTTTTATGCGCGACAGGGTACTCCATGGTTTTTGAGTATTATGGAAGAGAAAACACAATGTTTGAATCCAAATATTATGAGTACATCTCCTAAGTCTGTTTTAGACGTTGGTGACAACATGTCTAAATCAAATCCTATTTTACTTCCAAATATTGAAAGAAGTGTGGCTGAAGAATCCAAAGAGTATTCTGAGCCTCAGTTTGATTATTATTGTCAAGAAGATCATGGTTTTCTTGAAATAAATGACACTGAAGATGTGACTCATGGCTCTGGACAATTGCTCTCTGGATCAAATCAGGAAATTTTTTATTCGAATACCTCTAAAGATGTTGATGCCCAAAAGCTCTCAAAAAACGTTGATGCCCAACAGCTGTTTAGGAACTGGACCACCTTGGATGATAGTGCCATGTTTGACATTGGGAATTCATATATTGAGAACGGTAGTCTTGATAATGACAATACCTTTCAGGAAGCTGTTGATTTTTTAGAGAAGGCCGGTTTCCATTCTTTAACTCTGCCTAGCTTGCCTCCTGATGATGCTCCAGATAAGTTCCACATCTCATGTGATAATTTGAAGAGAGAGAATCATCGGAGCTGTAAAAGATCATCAAATAAGTTAACTGGGGATTCTGAAGAAAGACGAGAAGCTGTGAAATATCTTTGCAAGAATCGTTCAAGGAGAGGGGCACTTTTGAAATTTGTTACTCCAAACAAAGTTTTGGACAAGAAGAGAAAAAATATGGATTCATTGCAGTGTAAGAAAAGCACCAAAAAACCAAGCCATACATCTGTCACCCCCCCTGTGGCCGCAGGAAGTTCACGGTGA 2082 0.4198 MCLSLSSPAMASEEPMDAPPAPNLLSETLSAAELVADLGGDYALFPPGGGSTEFRQLDDDVSSSLWSSALVSNSRVSAVAPESWIAPQGNWLLPENEGSDNAESASEVVPSKMGAGLVNLGNTCFLNAILQCFTHTVPLVQGLRSSTHPIPCSGHKDGFCVICALRIHVERSLAASGGTFSPLEFVNNLKYFSSDFRRYQQEDAHEFMQCTLDKLERCFLGLKKSNLNFEDVNLVEKVFGGRLISKLQCSTCDHTSNTFEPLIDMSLEIDNVDSLPSALESFTKVENIDDNLQCDNCKEEVSMEKQLMLDQTPSVAAFHLKRFKTDGILVEKIDKHIDFPLELDLQPYTIKVMEDPGAENDVPLKYDLYAIVVHTGLSSTSGHYFCFVRSAPDTWHKLDDSMVTEVSVETVLSQEAYILFYARQGTPWFLSIMEEKTQCLNPNIMSTSPKSVLDVGDNMSKSNPILLPNIERSVAEESKEYSEPQFDYYCQEDHGFLEINDTEDVTHGSGQLLSGSNQEIFYSNTSKDVDAQKLSKNVDAQQLFRNWTTLDDSAMFDIGNSYIENGSLDNDNTFQEAVDFLEKAGFHSLTLPSLPPDDAPDKFHISCDNLKRENHRSCKRSSNKLTGDSEERREAVKYLCKNRSRRGALLKFVTPNKVLDKKRKNMDSLQCKKSTKKPSHTSVTPPVAAGSSR 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00166 693 MobiDBLite consensus disorder prediction 1 24 - -
Gma01g00166 693 Gene3D Cysteine proteinases 111 428 - -
Gma01g00166 693 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 115 424 IPR028889 -
Gma01g00166 693 MobiDBLite consensus disorder prediction 661 693 - -
Gma01g00166 693 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 366 384 IPR018200 GO:0004843|GO:0006511
Gma01g00166 693 Pfam Ubiquitin carboxyl-terminal hydrolase 116 421 IPR001394 GO:0004843|GO:0016579
Gma01g00166 693 SUPERFAMILY Cysteine proteinases 114 423 IPR038765 -
Gma01g00166 693 MobiDBLite consensus disorder prediction 675 693 - -
Gma01g00166 693 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 109 458 - -
Gma01g00166 693 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 116 131 IPR018200 GO:0004843|GO:0006511
Gma01g00166 693 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 20 109 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00166 Gma-Chr1 1785054 1788754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00166 110 423 Miscellaneous Gene Families AT4G31670 35.604 9.13e-57 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00166 K11855 - gmx:100806936 1374.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00166 01 1785054 1788754 Gma01g00166 01 1785054 1788754 ECH
Gma01g00166 01 1785054 1788754 Gma09g01899 09 44610716 44614718 GST