LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma09g01752	ATGCTTAGATATTTTCACCGAATTTCCGGCGACCGGCCAGCCACCGCTCCGAAGGTTCAGCAACCCAATCACAACGTCACTGCCGCCGTCAACCAACCGCCGCCGGCAGATGATGTCAGAGGAACCGACACGCCGCCGGAGAAGGTGCCGCGGCGCGTTTTACCGGCAAATTTCGCGCCAAACGAGAACAACTCTGGTCCCTCCCTGTTTGAGAGCATCATGCACAAATTCGTCAAGGTCGATGACAACGAAAGAGTTATTCAGAGGAGCCACTCATTGAATGGTAGTTTGGCTAAATCTTCTTTACCAGTGGGAATATGTGCTGATACTGATCGTAAAGTGGTGAACATGGAAGAGACAGCTTTTCAACCTTTAGGGAAAGTGAAAGATAATGCTGTGAATTTCAAGGAAAAGGCTAATCAGGAGAACATTGCACTGGTTGAAACTGATGATGATGTTACTGGACCAGAAACCCCAGGGACGCTGCCTCTTGCTTCTCACCTGAAGCGAAGTCGAGAGGATGGATCCAAGTTTGGTTCGTTGCTGAATTCTGGCAAACGAGTTAGATTTCTCGACGATTCACTGGAATTGGACATGACTAAGAAGGAAGCAGAAGTGGCTAGCAAGTTTGAATGGCTCAATCCTTCTCGAATCAGGGATGCTAATGGAAGAAGGTCGAATGATCCTTTGTATGATAGGACAACGCTTTATATTCCTCCAGAAGCTTTGGGGAAAATGTCAGCATCACAGAAACAGTATTGGAGTGTCAAATGTAAATATATGGATGTTTTGCTTTTTTTTAAAGTGGGAAAATTTTATGAGCTTTATGAAATGGATGCTGACATTGGCCATAAGGAGCTTGATTGGAAAATAACGTTAAGTGGTGTTGGAAAATGTCGGCAGGTTGGTATATCTGAAAGTGGGATTGATGATGCTGTTCAAAAGCTGGTTGCATGTGGGTATAAGGTTGGACGAGTGGAGCAATTAGAGACATCTGAAGAAGCAAAAGCTAGAGGAGCTAACTCTGTTATTCGGAGAAAATTAGTTCAGGTAGTCACTCCATCAACCAATGTGGATGGTAATATTGGTCCTGATGCTGTTCACCTTCTCTCAATAAAAGAGGAAAACAATGGCTTGGATAATGGTGCAGTTGTGTATGGATTTGCTTTTGTTGATTGTGCTCGGCTTAGATTTTGGGTTGGCTCTATAGACGATGATGCATCCTGTTCTGCTTTGGGGGCTTTATTGATGCAAGTGTCACCCACGGAAGTTATATATGATAATAGAGGTTTATCTAAAGAAGCTCAGAAAGCACTTAGAAAATTTTCGTTGAATGGTTCGAAGGCACTACAGTTCACTCCAGTTCAGTCGATGACTGACTTGGTGAACAATGAAATTAGGGATTTAATTCACTCAAAGGGATACTTCAAAGGCTCGTCTCATTCACTGGATCATGTACTGAGCAGTGTGATTCATCGTGAAATCACCTTGTCTGCTCTAGTTGGGCTGATTGATCATCTGGATAGATTGATGTTGAATGATGCCCTACAGAATGGGGATTTATATACATACCAAGTTTACAGGGGTTGCCTTAAAATGGATGGTCCAACAATGATAAATCTAGAACTTTTTGTCAATAATGAGGATGGTTCATTGTACAATTGTCTTGATAAGTGTGTAACTTCATCTGGAAAGCGGCTTCTTAGGAACTGGATCTGCTGTCCATTAGTAGATGCTGAAATAATTAACAACAGGCTTGATATAGTGGATGATCTAATGGCTAACCCAGAGATTGTGTCACATATTGCTCAACATCTTCGCAGGCTTCCAGACTTGGAACATTTGCTTGGCCGAATTAAGTCCAGCCTTCAATTATCAGGCCCTCTCTTATTGCCCTTCTTGGGAAAGAAAATATTGAAGCAGAGGGTGAAAGTGTTTGGATCACTTGTGAAAGGCCTTCGGACTGCTTTGAGCTTGTTGCTTCTTCTACAGAAAGAGCAGCCTCTAATATCGTCTTTGACCAAAGTTTTTAAACTTCCAATTCTGACTGGCAGTAACGGGCTCGACCAATTTCTTGCTCAGTTTGAAGCAGCAGTAGACAGCGACTTCCCAAATTACCAGAATCACAACGTTACAGATTCAGATGCTGAAACACTCACAATACTTGCTGAATTATTTTTGGAGAAAGCTGCTCAGTGGTTTGAAGTTGTTCATGCCATCAATTGCATTGATGTATTAAGATCTTTTGCTGTTACTTCTACCTTTTCTCGTGGAACTATGTCTAGGCCAGTCATAGTGGCATCAAAAGGTACAAGTAAAGACAATGGAGGAACTGTGCTCAAGATGAAGGGACTATGGCATCCATTTGCCCTTGGAGACAGTGGATGTTTGCCTGTCCCCAATGATGTAATCCTTGGTGAGAATGAAGATGGGTCGCATCCTCGAACTTTGCTGCTTACTGGACCAAACATGGGTGGAAAGTCAACACTTCTGCGTTCCACCTGTCTAGCTGTTATTATGGCCCAGCTAGGCTGTTATGTACCATGTGAAAGTTGTGTTCTCTCAGCTGTGGATATCATCTTCACACGACTTGGAGCCAAAGATAGAATCATGACAGGCGAGAGTACCTTCTTTGTTGAGTGTACTGAAACGGCCTTGGTGCTTCAGAATGCTACTCAAGATTCTCTTGTTATCCTTGATGAATTGGGTCGGGGAACAAGCACTTTTGATGGCTATGCCATTGCATATGCAGTATTCCGGCATCTGATTGAAAAAGTTAACTGTCGCATGCTATTTGCCACACACTACCATTCACTCACGAAAGAGTTTGCTTCCCATCCACGCGTCATAATGCAACATATGGCTTGTGCTTTCAAGTCAAAATCTGATACCCATTCCATGCGTGATCAGGAACTAGTTTTCCTATATCGGCTTGCCTCCGGACCATGTCCAGAGAGCTACGGGTTGCAGGTTGCCCTCATGGCTGGAATCCCAGAAAAAACGGTAAACATTGCTTCTAAGGCAAGCCAACAGATGAAAAAATCAATTGGACAAAGTTTTAGGTCAAGCGAACAGAGATCAGAGTTCTCAACCCTTCATGAAGAATGGTTGAAGACCTTGGTATCTATCTCAAGAATAGAGGATTGTAACTCTTTGGATGAAGATGCTTTAGATACATTAATCTGTCTGTGGTATGAAGTTAAAACTTCATTTATATCAGGCAAGTAA	3228	0.4287	MLRYFHRISGDRPATAPKVQQPNHNVTAAVNQPPPADDVRGTDTPPEKVPRRVLPANFAPNENNSGPSLFESIMHKFVKVDDNERVIQRSHSLNGSLAKSSLPVGICADTDRKVVNMEETAFQPLGKVKDNAVNFKEKANQENIALVETDDDVTGPETPGTLPLASHLKRSREDGSKFGSLLNSGKRVRFLDDSLELDMTKKEAEVASKFEWLNPSRIRDANGRRSNDPLYDRTTLYIPPEALGKMSASQKQYWSVKCKYMDVLLFFKVGKFYELYEMDADIGHKELDWKITLSGVGKCRQVGISESGIDDAVQKLVACGYKVGRVEQLETSEEAKARGANSVIRRKLVQVVTPSTNVDGNIGPDAVHLLSIKEENNGLDNGAVVYGFAFVDCARLRFWVGSIDDDASCSALGALLMQVSPTEVIYDNRGLSKEAQKALRKFSLNGSKALQFTPVQSMTDLVNNEIRDLIHSKGYFKGSSHSLDHVLSSVIHREITLSALVGLIDHLDRLMLNDALQNGDLYTYQVYRGCLKMDGPTMINLELFVNNEDGSLYNCLDKCVTSSGKRLLRNWICCPLVDAEIINNRLDIVDDLMANPEIVSHIAQHLRRLPDLEHLLGRIKSSLQLSGPLLLPFLGKKILKQRVKVFGSLVKGLRTALSLLLLLQKEQPLISSLTKVFKLPILTGSNGLDQFLAQFEAAVDSDFPNYQNHNVTDSDAETLTILAELFLEKAAQWFEVVHAINCIDVLRSFAVTSTFSRGTMSRPVIVASKGTSKDNGGTVLKMKGLWHPFALGDSGCLPVPNDVILGENEDGSHPRTLLLTGPNMGGKSTLLRSTCLAVIMAQLGCYVPCESCVLSAVDIIFTRLGAKDRIMTGESTFFVECTETALVLQNATQDSLVILDELGRGTSTFDGYAIAYAVFRHLIEKVNCRMLFATHYHSLTKEFASHPRVIMQHMACAFKSKSDTHSMRDQELVFLYRLASGPCPESYGLQVALMAGIPEKTVNIASKASQQMKKSIGQSFRSSEQRSEFSTLHEEWLKTLVSISRIEDCNSLDEDALDTLICLWYEVKTSFISGK	1075

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Gma09g01752	1075	Gene3D	MutS, connector domain	367	531	IPR036678	GO:0005524\|GO:0006298\|GO:0030983
Gma09g01752	1075	Pfam	MutS domain III	537	750	IPR007696	GO:0005524\|GO:0006298\|GO:0030983
Gma09g01752	1075	CDD	ABC_MSH6_euk	781	1005	-	-
Gma09g01752	1075	Gene3D	-	771	1058	IPR027417	-
Gma09g01752	1075	MobiDBLite	consensus disorder prediction	1	48	-	-
Gma09g01752	1075	SMART	mutATP5	814	1010	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
Gma09g01752	1075	Pfam	MutS domain V	818	1012	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
Gma09g01752	1075	MobiDBLite	consensus disorder prediction	16	30	-	-
Gma09g01752	1075	SUPERFAMILY	DNA repair protein MutS, domain II	386	544	IPR036678	GO:0005524\|GO:0006298\|GO:0030983
Gma09g01752	1075	ProSitePatterns	DNA mismatch repair proteins mutS family signature.	895	911	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
Gma09g01752	1075	SUPERFAMILY	DNA repair protein MutS, domain III	547	754	IPR036187	-
Gma09g01752	1075	Pfam	MutS domain II	369	517	IPR007860	GO:0005524\|GO:0006298\|GO:0030983
Gma09g01752	1075	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	776	1014	IPR027417	-
Gma09g01752	1075	Pfam	MutS domain I	249	359	IPR007695	GO:0005524\|GO:0006298\|GO:0030983
Gma09g01752	1075	Gene3D	-	532	757	-	-
Gma09g01752	1075	PANTHER	DNA MISMATCH REPAIR PROTEIN MSH7	232	1066	-	-
Gma09g01752	1075	SMART	DNAend	547	793	IPR007696	GO:0005524\|GO:0006298\|GO:0030983
Gma09g01752	1075	SUPERFAMILY	DNA repair protein MutS, domain I	235	356	IPR016151	GO:0005524\|GO:0006298\|GO:0030983
Gma09g01752	1075	PANTHER	DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER	232	1066	IPR045076	GO:0005524\|GO:0006298\|GO:0030983\|GO:0140664
Gma09g01752	1075	Gene3D	DNA repair protein MutS, domain I	205	365	IPR016151	GO:0005524\|GO:0006298\|GO:0030983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma09g01752	Gma-Chr9	43130806	43139095	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma09g01752	K08737		-	gmx:100818859	2077.37

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma09g01752	09	43130806	43139095	Gma09g01752	09	43130806	43139095	ECH
	Gma07g00792	07	8404269	8413401	Gma09g01752	09	43130806	43139095	GST