Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g01962 ATGCCCCCGAGATCAGGAAAAGGGAAATCAAATAAAGCAAAGGCAGAGAAGAAGAAAAAGGAAGAGAAAGCAGCAGCAGCACCTTCTCTTGTTGACATCATTGTGGTCACCCCATATGACACACAGATTGTGTTGAAGGGCATCTCTACTGATAAGATACTTGATGTAAGAAAACTATTGGCTGTGAAGGTGGAGACATGCCATTTTACAAATTATTCTTTATCTCATGAGGCCAAAGGGCAGAGATTAAATGACAGAGTGGAAGTTGTTACCCTAAAGCCATGTCTTCTAAGAATGGTTGAAGAGGATTACACAGATGAAGCCCAAGCAATTGCGCACGTGCGGAGGGTCTTGGACATTGTGGCCTGCACAACAAGGTTCGGTAGGCCTAAGCGGAGCGTATCAAGCCCAGAGTCAAGGCCCAAGAAAAACGGTAAGGCCCAACATCAGAACAAGATGAGTTTGAGCCCACCGGGGACACCGAATGGGGAATCCCGGGTCGGGTCACCGTCGTCGGAGGCGCCACCGTCGGCGATATCGGAGAACGTGGGGATGAAAGCCATTCACCCGACGCCAAAGCTCTCAGATTTCTACGAGTTCTTCTCCTTCTCTCACCTCTCTCCACCCATTTTACGTTTGAAGAGATGTGAAGTGAAGGATGAAGAGGATAGGCGCAAAGGAGATTACTTTCAGCTTCAGATTAAAATATGCAATGGGAAGGTAATAGAAGTGGTTGGTTCAGAGAAAGGGTTTTCCACAGTAGGGAAGCACTCTCTGCACAGCCACACCTTGGTTGATCTTCTCCAACAGCTCAGCCGTGCCTTTGCTAACGCATATGAATCATTGATGAAAGCCTTTTTGGAACGTAATAAGTTTGGAAATCTTCCGTATGGATTCCGAGCAAATACATGGCTTGTCCCTCCATCTGTCGCCGAGTCTCCTTCAAACTTTCCTGCATTACCTGCTGAAGATGAAAACTGGGGTGGTAATGGTGGTGGCCATCAAAGAAATGGCGCATTGGATCATAGATCATGGGCTACAGATTTTGCAATACTGGCCTCCCTTCCTTGCAAAACTGAGGAGGAGAGGGTGGTTAGAGATAGAAAAGCATTTCTGCTTCACAGTCAGTTTGTTGATACCTCAATATTTAAGGCTGTTGCGGCTATACAGCATGTCATGGAATCCAAGTCAAATATCAAGAGTGAATTGAATTCTTCTCCGGGTTCTGTTCTGCATGAAGATCTCACGGGAGACTTATCCATTATAGTCAAACGTGATATCCAGGATGGAAATACAAAGTATGATTCTATACTGGATGAATCTAGCATGCATGAAGGGGATGCTCAGAAGAATTTAATCAAAGGGTTGACTGCAGATGAAAGTGTAATTGTTCATGATACTTCTTCCTTGGCTGTTGTTGTTGTACACCACTGTGGATATACTGCAACAGTAAAGGTTGTGGGTAATGTGAACGTGAGGAAGCCTGAAGTCCGGGATATTGAGATAGATGATCTGCCAGATGGAGGGGCAAATGCCCTCAACATAAACAGTTTGAGGGTACTGCTTCACAAGTCTGGAGCTGAGACATTAGAAGGGACTTTATCATCCCTATCAAATTCGGATGACTTAGATGCTTCTAAAGTCCTTGTTAAGAAGGTGGTTCAAGAATGCATGGAAAAGATAAAGGGGGAGCCAAGTGCTTCAAAAAGGTCTATTCGATGGGAACTTGGTTCCTGTTGGATTCAGCATTTGCAAAAACATGAAACTTCAACAGATAGCAGTTCCAAAAACAAAGAAGATGGCAAAGATGTTGATCAAGCTGTTAAAGGTCTTGGAAAGCAATTTAAATTGTTGAAGAGGAGAGAGAAGAAATCAAATAATCTAGATGGTGCAGATTTTAAGGAGCAAAATGACTCTAGACTTGCAAACATGGATGATGTTGCTGATAAAGTTGAGCCAAACAATGATGACTTAAGTAACTCTAATGAGCTAGAGAAACTACTTTCTGAAGAATCATTTTTGCGTCTCAAAGAATCTGGAACTGGTCTTCACACAAAGTCAGTAGACGAGCTTATCAGCATGGCGCACAAGTTTTATGATGAAGTTGCCTTGCCAAAGCTGGCTATGGACTTTGGATCACTTGAACTTTCTCCAGTCGATGGTCGTACACTGACTGACTTTATGCATTTAAGAGGATTACAGATGCGATCTTTGGGTAAAGTGGTTAAACTTGCAGAGAATCTGCCACACATACAATCCCTTTGTATTCATGAGATGATCACTCGAGCTTTCAAGCATCTACTTAAAGCAGTTATTGCCTCTGTTGAAAATGTAGCTGATCTATCTTCAGCCATTGCATCAACACTGAATTTCTTACTTGGTGGGTCTCGAACAGAAGATACCAGTGACCAAAGTTTGAGTGATGATCATAACCTCAGAATTCAATGGTTACATCTGTTTTTGTCCAAAAGATTTGGGTGGACACTAAATGATGAATTTCAACATTTAAGGAAGTTGTCAATTCTCAGAGGGCTCTGTCACAAGGTTGGATTGGAATTGTTTCCAAGAGATTATGACATGGAGTCCAGTAAGCCCTTTGGGGAAAATGATATTATCAGCCTGGTTCCTGTTTGCAAGCATGTTGGGTGCTCCTCAATAGATGGACGCAATTTATTGGAGTCTTCCAAAATTGCTCTTGATAAAGGAAAGCTTGAGGATGCTGTGACTTATGGAACAAAGGCATTAGCTAAGATGATGGCTGTTTGTGGACCCTATCATCGAAATACTGCAAGTGCATATAGTCTTCTAGCTGTGGTTCTCTACCACACTGGAGATTTTAACCAGGCCACCATCTATCAGCAAAAGGCCTTGGATATAAATGAGAGAGAGCTTGGGCTTGACCACCCTGACACTATGAAAAGCTATGGGGATCTTTCTGTCTTTTATTATCGTCTGCAACACATTGAGTTGGCTCTGAAGTATGTTAATCATGCTCTATTCCTTCTACATTTTACATGTGGGCTGTCTCATCCAAACACAGCAGCAACTTATATAAATGTGGCTATGATGGAAGAGGCCATGGGAAATGTTCATGTGGCACTCAGATACTTGCATGAAGCTCTTAAATGCAACAAAAGATTGTTAGGAGCAGATCATATACAGACTGCCGCAAGCTATCACGCCATAGCTATAGCTCTTTCATTGATAGATGCATTTTCTCTGAGTGTGCAACATGAGCAAACTACACTAAAGATACTTCAAGCAAAGCTTGGATCAGAAGATCTTCGTACACAGGATGCTGCTGCATGGCTTGAGTATTTTGAATCAAAAGCCCTAGAGCAGCAAGAAGCAGCTAAAAATGGAACTCCAAAGCCTGATGCATCCATTGCAAGTAAAGGTCACCTGAGCGTGTCAGATCTCCTGGATTTTATTAGTCCCGACCCAAAAGGAAACGATGCTCGGAGCAAACAGAGGCGTGCAAAGATACTCTCAACAAGTGATGACAACAGTCAAGAACATGACGATGCAATAGCCAATGAGAGCATTCTTTTTGATAACTCAAAAGATGCTCCAAGTATGACAGAAGTCAAGATAGAAGAAACAAATGGCAAACTTGATTCTCAAGTACAGAAAGAAAATGGTGATTTCACTAGGTACGGACCAGTGACAAGTGAACCTGTTTATGAGGCATCATCTGATGAAGGTTGGCAAGAAGCCAATTCAAAAGGGCGATCAGGAAATGCTGCTAACCGCAAGTTTGGACACAGAAAGCGACCTCACCTATCAAAGCTCAGTGTTAATGGTTCTAATAATTACATTTACAGGGAAGGCAGTTCTAGGAATGAGATTACTTCGCCACCACAAAGAGGAGTTCCAAAAGTCATGTTAGACATGTCATCTCCATCTAGACAATCAAAATCTCGAAACTTAACTTTGAATGAGGATTCTGTTAATCATTCAACAAAAGCTTCTGTGTCCAAAATTTCATCTCCGGCTCTAAGTTCCTTGGCTTCAAAGTCTATATCCTACAAAGAAGTTGCTCTAGCACCACCAGGAACTGTTTTAAAGCCATTGTTGGAAAAGGCTGAGATGGACAAGGTTAATGCTGAAGATGAGATATGTGGCAATATAGCTGTAACATCAATAAATGAAGGTACCTGCCAAAGTTCCATAACTAATACAGTTTCTCAGAATGATGAAACAGAGGAAACTCATGAAATTGAACCTCAACAAGAAAGTTCTGGATCGGAACTTGAGAAGGTTTGTGCTTCTGATCAGGAAAAACCTACAGAAACAAATGGCAGTAAGCTTTCGGCTGCTGCCAAACCTTTCAATCCAGGAATGTTGTCCATGTCTCACCATCTAAATTCAGCTTCCTTCACAAGCATGTATGATACAGATGTTAGTCAAGGCATGCACGTGGAGCCTGTGCTTCCCCCTGCTGTTGCTAGGGTCCCTTGTGGGCCTAGATCACCTCTGTATTATAGAACCAACTATACTTTTCGCATGAAACATGGTTCTACTAAAGGTCAAACCTCTATCAAAGAAAGAAGTGGATTTGGGTCTCCAAGAATAATGAATCCGCATGCGCCAGAGTTTATTCCCAGAAGTGCTTCTCAAATAGAAGCCAAGGATGCCAATTCAAATGTTTCCAATGAGCATAACCCTTTGTCTGACGAAGGCATGCCAGAAAAAAACAAGCTAGATGAAAATTTTGTTGAAATCAAGGGGAGCTCCACAAAAAACAGTATTTCTGAATCTGAGAAGTCCGAGATAGCAAGGCAGATATTGCTCAGTTTTCTAGTGAAATCTGTCAAGGAAAATATTGATTATGTGGATGAGTCTAAGGATGATGAAGGAAAAATTGAGAACTTGGAAAGTTGTTCTGATGAAATTACCAAAGACCGTGCTGTCATAAACATTATGTATGGAAATGAAGAAAAGAATAAGACAGTGCCTCATTCCAGTGATAGCGTTGAGCCAGAGAAATTAGGAGTTACTGAAAATAAGAATGGAGATGGTGAAGGGTTTATAGTTGTCTCAAAGAGGAGGAAAAACAGGCAGAAGATCACAAATGGAGTCACAGAATTGTACAACCAACAGTCCATTTGTGCTTCAGTTCGTTGA 5127 0.4192 MPPRSGKGKSNKAKAEKKKKEEKAAAAPSLVDIIVVTPYDTQIVLKGISTDKILDVRKLLAVKVETCHFTNYSLSHEAKGQRLNDRVEVVTLKPCLLRMVEEDYTDEAQAIAHVRRVLDIVACTTRFGRPKRSVSSPESRPKKNGKAQHQNKMSLSPPGTPNGESRVGSPSSEAPPSAISENVGMKAIHPTPKLSDFYEFFSFSHLSPPILRLKRCEVKDEEDRRKGDYFQLQIKICNGKVIEVVGSEKGFSTVGKHSLHSHTLVDLLQQLSRAFANAYESLMKAFLERNKFGNLPYGFRANTWLVPPSVAESPSNFPALPAEDENWGGNGGGHQRNGALDHRSWATDFAILASLPCKTEEERVVRDRKAFLLHSQFVDTSIFKAVAAIQHVMESKSNIKSELNSSPGSVLHEDLTGDLSIIVKRDIQDGNTKYDSILDESSMHEGDAQKNLIKGLTADESVIVHDTSSLAVVVVHHCGYTATVKVVGNVNVRKPEVRDIEIDDLPDGGANALNINSLRVLLHKSGAETLEGTLSSLSNSDDLDASKVLVKKVVQECMEKIKGEPSASKRSIRWELGSCWIQHLQKHETSTDSSSKNKEDGKDVDQAVKGLGKQFKLLKRREKKSNNLDGADFKEQNDSRLANMDDVADKVEPNNDDLSNSNELEKLLSEESFLRLKESGTGLHTKSVDELISMAHKFYDEVALPKLAMDFGSLELSPVDGRTLTDFMHLRGLQMRSLGKVVKLAENLPHIQSLCIHEMITRAFKHLLKAVIASVENVADLSSAIASTLNFLLGGSRTEDTSDQSLSDDHNLRIQWLHLFLSKRFGWTLNDEFQHLRKLSILRGLCHKVGLELFPRDYDMESSKPFGENDIISLVPVCKHVGCSSIDGRNLLESSKIALDKGKLEDAVTYGTKALAKMMAVCGPYHRNTASAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLSVFYYRLQHIELALKYVNHALFLLHFTCGLSHPNTAATYINVAMMEEAMGNVHVALRYLHEALKCNKRLLGADHIQTAASYHAIAIALSLIDAFSLSVQHEQTTLKILQAKLGSEDLRTQDAAAWLEYFESKALEQQEAAKNGTPKPDASIASKGHLSVSDLLDFISPDPKGNDARSKQRRAKILSTSDDNSQEHDDAIANESILFDNSKDAPSMTEVKIEETNGKLDSQVQKENGDFTRYGPVTSEPVYEASSDEGWQEANSKGRSGNAANRKFGHRKRPHLSKLSVNGSNNYIYREGSSRNEITSPPQRGVPKVMLDMSSPSRQSKSRNLTLNEDSVNHSTKASVSKISSPALSSLASKSISYKEVALAPPGTVLKPLLEKAEMDKVNAEDEICGNIAVTSINEGTCQSSITNTVSQNDETEETHEIEPQQESSGSELEKVCASDQEKPTETNGSKLSAAAKPFNPGMLSMSHHLNSASFTSMYDTDVSQGMHVEPVLPPAVARVPCGPRSPLYYRTNYTFRMKHGSTKGQTSIKERSGFGSPRIMNPHAPEFIPRSASQIEAKDANSNVSNEHNPLSDEGMPEKNKLDENFVEIKGSSTKNSISESEKSEIARQILLSFLVKSVKENIDYVDESKDDEGKIENLESCSDEITKDRAVINIMYGNEEKNKTVPHSSDSVEPEKLGVTENKNGDGEGFIVVSKRRKNRQKITNGVTELYNQQSICASVR 1708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g01962 1708 Pfam Mitochondrial function, CLU-N-term 50 121 IPR028275 -
Gma08g01962 1708 MobiDBLite consensus disorder prediction 1149 1174 - -
Gma08g01962 1708 MobiDBLite consensus disorder prediction 1650 1669 - -
Gma08g01962 1708 CDD CLU-central 718 860 IPR033646 -
Gma08g01962 1708 MobiDBLite consensus disorder prediction 1298 1323 - -
Gma08g01962 1708 SUPERFAMILY TPR-like 967 1091 IPR011990 GO:0005515
Gma08g01962 1708 MobiDBLite consensus disorder prediction 1 23 - -
Gma08g01962 1708 MobiDBLite consensus disorder prediction 1506 1531 - -
Gma08g01962 1708 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT EIF-3 1 1705 IPR027523 GO:0006996
Gma08g01962 1708 MobiDBLite consensus disorder prediction 1648 1670 - -
Gma08g01962 1708 Pfam Translation initiation factor eIF3 subunit 135 716 859 IPR033646 -
Gma08g01962 1708 ProSiteProfiles TPR repeat profile. 930 963 IPR019734 GO:0005515
Gma08g01962 1708 MobiDBLite consensus disorder prediction 1263 1286 - -
Gma08g01962 1708 MobiDBLite consensus disorder prediction 1399 1413 - -
Gma08g01962 1708 MobiDBLite consensus disorder prediction 148 178 - -
Gma08g01962 1708 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 1705 - -
Gma08g01962 1708 SMART tpr_5 1014 1047 IPR019734 GO:0005515
Gma08g01962 1708 SMART tpr_5 972 1005 IPR019734 GO:0005515
Gma08g01962 1708 SMART tpr_5 930 963 IPR019734 GO:0005515
Gma08g01962 1708 Gene3D Tetratricopeptide repeat domain 889 1134 IPR011990 GO:0005515
Gma08g01962 1708 ProSiteProfiles Clueless (Clu) domain profile. 323 595 IPR025697 -
Gma08g01962 1708 MobiDBLite consensus disorder prediction 129 183 - -
Gma08g01962 1708 MobiDBLite consensus disorder prediction 1394 1441 - -
Gma08g01962 1708 SUPERFAMILY TPR-like 896 999 IPR011990 GO:0005515
Gma08g01962 1708 MobiDBLite consensus disorder prediction 1142 1174 - -
Gma08g01962 1708 Pfam Tetratricopeptide repeat 1013 1087 - -
Gma08g01962 1708 Pfam Tetratricopeptide repeat 929 999 - -
Gma08g01962 1708 MobiDBLite consensus disorder prediction 1199 1323 - -
Gma08g01962 1708 MobiDBLite consensus disorder prediction 1544 1564 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g01962 Gma-Chr8 17576222 17586867 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g01962 K03255 - gmx:100801625 3269.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g01962 08 17576222 17586867 Gma08g01962 08 17576222 17586867 ECH
Gma07g00268 07 2355490 2366016 Gma08g01962 08 17576222 17586867 GST