Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g01790 ATGGAGTTCCAAGATAAGCGTTTATCTCTGAGATCGAGCTTGACGTTCAGCGAGACGCTGTGCGCAGTGTTCATTCCGTTCATAGGAATAGTCGAAGCTTTGGTTTTCACATTCACTAGTTGCTTCGATTTCCAATCTCCCAGGAATAAGAAGAAACATTCTTCTACCTTCGACGACATTCTCACCCTCGCCGAGGATTCTCCATTTAGTATTAATGAAATCGAGGCCTTGCGTGAGTTGTTCAAGAAGTTGAGTAGTTCTATCATTGATGATGGCCTCATCCACAAGGAAGAACTCACATTGGCACTGTTGAAGACCACCACCGGGGAGAATCTTTTCCTTGACAGGGTGTTTGATGTCTTTGATGAAAAAAGAAACGGCGTTATAGAATTTGAGGAGTTTGTGCATGCTCTCAGTATCTTTCATCCTTGTACTCCTCTGGAAAAGAAAATTGATTTTGCTTTTAGATTGTATGACTTGAGACAGACTGGATATATTGAGAGAGAAGAAGTTAGGCAAATGGTTGTTGCCATTCTGTCAGAATGTGGCATGGATCTGGATGATGAAATCCTTGATACCATTATTGATAAGACATTTCAAGATGCTGATGCTGACAAAGATGATAAAATAAGCAAAGAAGAATGGAAGGCATTTGTCATTCGACACCCGACACTCTTGAAGCACATGACTCTACCTCATCTAAAGGACATTACTACACTGTTTACCAGTTTCATCTTCAACACCGAAGTTGATGATTCTCACTGGCATATTAATGGCAATCATTAA 786 0.4059 MEFQDKRLSLRSSLTFSETLCAVFIPFIGIVEALVFTFTSCFDFQSPRNKKKHSSTFDDILTLAEDSPFSINEIEALRELFKKLSSSIIDDGLIHKEELTLALLKTTTGENLFLDRVFDVFDEKRNGVIEFEEFVHALSIFHPCTPLEKKIDFAFRLYDLRQTGYIEREEVRQMVVAILSECGMDLDDEILDTIIDKTFQDADADKDDKISKEEWKAFVIRHPTLLKHMTLPHLKDITTLFTSFIFNTEVDDSHWHINGNH 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g01790 261 Gene3D - 61 253 - -
Gma08g01790 261 PANTHER CALCINEURIN B 3 252 IPR045198 GO:0005509|GO:0019722|GO:0019900
Gma08g01790 261 PRINTS Recoverin family signature 117 138 - -
Gma08g01790 261 PRINTS Recoverin family signature 164 182 - -
Gma08g01790 261 PRINTS Recoverin family signature 210 230 - -
Gma08g01790 261 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 3 252 - -
Gma08g01790 261 Pfam EF-hand domain pair 149 218 IPR002048 GO:0005509
Gma08g01790 261 SMART efh_1 150 178 IPR002048 GO:0005509
Gma08g01790 261 SMART efh_1 113 141 IPR002048 GO:0005509
Gma08g01790 261 SMART efh_1 194 222 IPR002048 GO:0005509
Gma08g01790 261 Pfam EF hand 114 134 IPR002048 GO:0005509
Gma08g01790 261 ProSiteProfiles EF-hand calcium-binding domain profile. 146 181 IPR002048 GO:0005509
Gma08g01790 261 ProSiteProfiles EF-hand calcium-binding domain profile. 109 144 IPR002048 GO:0005509
Gma08g01790 261 ProSiteProfiles EF-hand calcium-binding domain profile. 190 225 IPR002048 GO:0005509
Gma08g01790 261 ProSitePatterns EF-hand calcium-binding domain. 203 215 IPR018247 -
Gma08g01790 261 SUPERFAMILY EF-hand 63 243 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g01790 Gma-Chr8 15948724 15951649 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g01790 37 253 EF-hand Containing Proteins AT4G26570 57.466 1.90e-86 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g01790 K06268 - gmx:100306023 494.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g00100 07 843903 846980 Gma08g01790 08 15948724 15951649 GST