Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g01209 ATGTATCAGAGCAGCATTGGCGCACACCGCCTCGCATACCGCTCTCAAATATCAAAACTGGTCAAAGCCGGTCTCATCAACCAAGCCATCTACCTGTTCGACCAAATGACCGAATCAAATTGCCGCGTCTTCAGCGTCGACTACAACCGCTTCATTGGCGTCCTCCTCCGCCACTCCCGCCTCCATCTCGCCCACCACTACTACCGCCGCCACGTCATCCCCCGCGGCTTTTCCCTCCTCCCCTTCACCTACTCCCGCTTCATCTCCGCCCTCTGCTCCGCCCCCAACAACATTAACCTCCCCCTCATCCACAGCCTCCTCCTCGACATGGACTCCCTCGGTTTCGTCCCCGACATTTGGGCCTTCAACACTTACCTCAACCTCTTATGCCGCCAAAATCGCTTAGAAACCGCCCTCGAACTCTTCCACTCCATGCCCTCCAAGGGAAGAGACCCCGACGTCGTTTCCTACACCATCATCATTGACGCGCTGTGCAATGCTAAACGCTTTGACGAGGCTGCTAAGGTTTGGCGTCGTTTGATTGACAAAGGGTTAAGCCCTGATTATAAAGCCTGTGTTGCTCTTGTTGTTGGGTTGTGCAGTGGAGGGCGCGTTGATTTGGCTTATGAGCTTGTTGTTGGTGTGATCAAGGGTGGGGTGAAGGTTAATAGCTTAGTTTATAATGCTTTGATTGATGGGTTTTGTAGGATGGGGAGGGTTGACAAGGCCATGAAGATTAAGGCGTTTATGAGCCGCACCGGGTGTGTGCCGGATTTGGTTACTTATAACATACTCTTGAATTACTGTTGTGAGGAAGGGATGGTGGATGAGGCCGTGAGGTTGGTGGAGACCATGGAGAGGAGCGGGGTGGAGCCGGATTTGTATAGCTATAATGAGCTCTTGAAGGGTTTTTGCAAGGCGAATATGGTGGACAGGGCTCATTTGATGATGGTGGAGAGGATGCAGACAAAAGGGATGTGTGATGTTGTTTCGTATAATACCGTTATTACGGCGTTCTGTAAGGCGCGCCGGACTAGGAAGGGTTATGAGTTGTTTGAGGAGATGTGTGGGAAGGGGATTAGGCCAGACATGGTGACATTTAATATACTTATAGATGCGTTTCTGAGGGAAGGAAGTACCCATGTGGTGAAGAAGCTGCTTGATGAAATGACAAAGATGCGTGTTCTTCCCGATTGTATATTCTATACAGCAGTAGTTGATCATCTGTGTAAGAATGGGAAGGTTGATGTGGCTCATAGTGTTTTTCGTGACATGGTGGAGAATGGGGTTAATCCAGATGTTATCTCTTACAATGCACTTCTAAATGGGTTTTGTAAGACTTCTagagttatggatgccatgcatctatttgatgaaATGCAGAGCAAAGGTTTGTACCCTGATGAGGTAACTTACAAGTTGATAGTTGGAGGGCTTATAAGGGGAAAAAAGATTTCACTGGCCTGTAGGGTATGGGATCAGATGATGGAGAGAGGCTTTACACTTAACAGACATCTCTCTGAGACTCTAGTCAATGCCATTCAATCAATTACACAAAGGCTTAGCAAACCTGACCTGAAACGTTATCTGCAGGCCAGCTTCTTGTAA 1608 0.4764 MYQSSIGAHRLAYRSQISKLVKAGLINQAIYLFDQMTESNCRVFSVDYNRFIGVLLRHSRLHLAHHYYRRHVIPRGFSLLPFTYSRFISALCSAPNNINLPLIHSLLLDMDSLGFVPDIWAFNTYLNLLCRQNRLETALELFHSMPSKGRDPDVVSYTIIIDALCNAKRFDEAAKVWRRLIDKGLSPDYKACVALVVGLCSGGRVDLAYELVVGVIKGGVKVNSLVYNALIDGFCRMGRVDKAMKIKAFMSRTGCVPDLVTYNILLNYCCEEGMVDEAVRLVETMERSGVEPDLYSYNELLKGFCKANMVDRAHLMMVERMQTKGMCDVVSYNTVITAFCKARRTRKGYELFEEMCGKGIRPDMVTFNILIDAFLREGSTHVVKKLLDEMTKMRVLPDCIFYTAVVDHLCKNGKVDVAHSVFRDMVENGVNPDVISYNALLNGFCKTSRVMDAMHLFDEMQSKGLYPDEVTYKLIVGGLIRGKKISLACRVWDQMMERGFTLNRHLSETLVNAIQSITQRLSKPDLKRYLQASFL 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g01209 535 Pfam PPR repeat 395 426 IPR002885 -
Gma08g01209 535 Pfam PPR repeat 219 246 IPR002885 -
Gma08g01209 535 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 293 324 IPR002885 -
Gma08g01209 535 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 3 517 - -
Gma08g01209 535 Pfam PPR repeat family 328 375 IPR002885 -
Gma08g01209 535 Pfam PPR repeat family 257 306 IPR002885 -
Gma08g01209 535 Pfam PPR repeat family 432 480 IPR002885 -
Gma08g01209 535 Pfam PPR repeat family 117 166 IPR002885 -
Gma08g01209 535 Gene3D Tetratricopeptide repeat domain 320 395 IPR011990 GO:0005515
Gma08g01209 535 Pfam PPR repeat 17 41 IPR002885 -
Gma08g01209 535 Gene3D Tetratricopeptide repeat domain 402 525 IPR011990 GO:0005515
Gma08g01209 535 Gene3D Tetratricopeptide repeat domain 126 237 IPR011990 GO:0005515
Gma08g01209 535 Gene3D Tetratricopeptide repeat domain 3 100 IPR011990 GO:0005515
Gma08g01209 535 Gene3D Tetratricopeptide repeat domain 245 319 IPR011990 GO:0005515
Gma08g01209 535 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 363 397 IPR002885 -
Gma08g01209 535 TIGRFAM PPR: pentatricopeptide repeat domain 226 258 IPR002885 -
Gma08g01209 535 TIGRFAM PPR: pentatricopeptide repeat domain 17 42 IPR002885 -
Gma08g01209 535 TIGRFAM PPR: pentatricopeptide repeat domain 435 469 IPR002885 -
Gma08g01209 535 TIGRFAM PPR: pentatricopeptide repeat domain 121 154 IPR002885 -
Gma08g01209 535 TIGRFAM PPR: pentatricopeptide repeat domain 260 293 IPR002885 -
Gma08g01209 535 TIGRFAM PPR: pentatricopeptide repeat domain 470 503 IPR002885 -
Gma08g01209 535 TIGRFAM PPR: pentatricopeptide repeat domain 330 363 IPR002885 -
Gma08g01209 535 TIGRFAM PPR: pentatricopeptide repeat domain 402 434 IPR002885 -
Gma08g01209 535 TIGRFAM PPR: pentatricopeptide repeat domain 295 326 IPR002885 -
Gma08g01209 535 TIGRFAM PPR: pentatricopeptide repeat domain 365 399 IPR002885 -
Gma08g01209 535 TIGRFAM PPR: pentatricopeptide repeat domain 155 188 IPR002885 -
Gma08g01209 535 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 398 432 IPR002885 -
Gma08g01209 535 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 328 362 IPR002885 -
Gma08g01209 535 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 153 187 IPR002885 -
Gma08g01209 535 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 223 257 IPR002885 -
Gma08g01209 535 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 258 292 IPR002885 -
Gma08g01209 535 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 468 502 IPR002885 -
Gma08g01209 535 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 118 152 IPR002885 -
Gma08g01209 535 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 3 517 - -
Gma08g01209 535 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 433 467 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g01209 Gma-Chr8 10279036 10280870 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g01209 254 514 Glycosyltransferase AT1G05670 29.389 1.09e-38 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g01209 - - gmx:100801230 1025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g01209 08 10279036 10280870 Gma08g01209 08 10279036 10280870 ECH
Gma05g01723 05 38882432 38883997 Gma08g01209 08 10279036 10280870 GST