Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g01723 ATGTATCAGAGCTGCATTGGCTCACACCGCCTCGCATACCGCTCTCAGATATCGAACCTGGTCAAAGCCGGTCTCATCAACCAAGCCATCCACCTGTTCGACCAAATGACCCAATCAAATTGCCGCGTCTTCAGCGTCGACTACAACCGCTTCATTGGCGTCCTCCTCCGCCACTCCCGCCTCCACCTCGCCCACCACTTCTACCGCCGCCACGTCATCCCCCGCGGCTTCTCCCTCCTCCCCTTCACCTACTCCCGCTTCATCTCCGCCCTCTGCTCCGCCCCCAACAACATTAACCTCCCCCTCATCCACAGGCTCCTGCTCGACATGGACGCCCTCGGCTTCGTCCCCGACATTTGGGCCTTCAACACTTACCTCAACCTCTTATGCCGCCAAAATCGCTTAGAAACCGCCCTCGAACTCTTCCACTCCATGCCCTCCAAGGGAAGAGACCCCGACGTCGTTTCCTACACAATTATTATCGACGCGCTGTGCAGAGCTAAACGCTTTGACGAGGCTGCTAGGGTTTGGCGTCGTTTGATTGACAGAGGGTTGAACCCTGATTATAAAGCCTGTGTTGCTCTTGTTGTCGGGTTGTGCGGTGGGGGGCGCGTTGATTTGGCTTATGAGCTTGTTGTTGGTGTGATCAAGGGTGGGGTGAAGGTTAATAGCTTAGTTTACAATGCTTTGATTGATGGGTTTTGTAGGATGGGGAGGGTTGATAAGGCCATGAAGATCAAGGCGTTTATGAGCCGGAACGGGTGTGTGCTGGATTTGGTTACTTATAACACACTGTTGAATTACTGTTGTGATGAGGGGATGGTGGATGAGGCCGTGAGGTTGGTGGAGACCATGGAGAGGAGTGGGGTGGAGCCGGATTTGTATAGCTATAATGAGCTGTTGAAGGGTTTTTGCAAGGCAAATATGGTGGATAGGGCTTATTTGATGATGGTGGAGAGGATGCAGACCAAAGGGATGTGTGATGTTGTTTCGTATAATACTGTGATCACGGCGTTCTGTAAGGCACGCCAGACTAGGAGGGGCTATGAGTTGTTTGAGGAAATGTGCGGGAAGGGGATTAGGCCGGACATGGTGACATTTAATGTACTTATAGATGCATTTCTGAGGGAAGGAAGTACCCATGTGGTTAAGAAGCTGCTTGATGAAATGACAAGGATGTGTGTTCTTCCCGATTGTATATTCTATACGGCAGTAGTTGATCATCTGTGCAAGAATGGGAAGGTTGATGTGGCTCATAGTGTTTTTTGTGACATGGTTGAGAATGGGGTAAATCCAGATGTCATCTCTTACAATGCACTTGTAAATGGGTTTTGTAAGGCTTCTAGAGTTATGGATGCCATGTGCCTATTTGATGAACTGCAGAGCAAAGGTTTGTACCCTGATGGGGTAACTTACAAGTTGATAGTTGGAGGGCTTATAAGGGGAAAAAAGATTTCACTGGCCTGTAGGGTCTGGGATCAGATGATGGAGAGAGGTTTTACACTTGACAGACATCTCTCTGAGACTCTAGTCATTGCCATTCAATCAAGTGATGGCACAACATGA 1566 0.4949 MYQSCIGSHRLAYRSQISNLVKAGLINQAIHLFDQMTQSNCRVFSVDYNRFIGVLLRHSRLHLAHHFYRRHVIPRGFSLLPFTYSRFISALCSAPNNINLPLIHRLLLDMDALGFVPDIWAFNTYLNLLCRQNRLETALELFHSMPSKGRDPDVVSYTIIIDALCRAKRFDEAARVWRRLIDRGLNPDYKACVALVVGLCGGGRVDLAYELVVGVIKGGVKVNSLVYNALIDGFCRMGRVDKAMKIKAFMSRNGCVLDLVTYNTLLNYCCDEGMVDEAVRLVETMERSGVEPDLYSYNELLKGFCKANMVDRAYLMMVERMQTKGMCDVVSYNTVITAFCKARQTRRGYELFEEMCGKGIRPDMVTFNVLIDAFLREGSTHVVKKLLDEMTRMCVLPDCIFYTAVVDHLCKNGKVDVAHSVFCDMVENGVNPDVISYNALVNGFCKASRVMDAMCLFDELQSKGLYPDGVTYKLIVGGLIRGKKISLACRVWDQMMERGFTLDRHLSETLVIAIQSSDGTT 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g01723 521 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 293 324 IPR002885 -
Gma05g01723 521 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 328 362 IPR002885 -
Gma05g01723 521 TIGRFAM PPR: pentatricopeptide repeat domain 330 363 IPR002885 -
Gma05g01723 521 TIGRFAM PPR: pentatricopeptide repeat domain 402 434 IPR002885 -
Gma05g01723 521 TIGRFAM PPR: pentatricopeptide repeat domain 435 468 IPR002885 -
Gma05g01723 521 TIGRFAM PPR: pentatricopeptide repeat domain 155 188 IPR002885 -
Gma05g01723 521 TIGRFAM PPR: pentatricopeptide repeat domain 226 258 IPR002885 -
Gma05g01723 521 TIGRFAM PPR: pentatricopeptide repeat domain 470 503 IPR002885 -
Gma05g01723 521 TIGRFAM PPR: pentatricopeptide repeat domain 295 326 IPR002885 -
Gma05g01723 521 TIGRFAM PPR: pentatricopeptide repeat domain 365 399 IPR002885 -
Gma05g01723 521 TIGRFAM PPR: pentatricopeptide repeat domain 121 154 IPR002885 -
Gma05g01723 521 TIGRFAM PPR: pentatricopeptide repeat domain 260 293 IPR002885 -
Gma05g01723 521 Pfam PPR repeat family 328 375 IPR002885 -
Gma05g01723 521 Pfam PPR repeat family 117 166 IPR002885 -
Gma05g01723 521 Pfam PPR repeat family 258 306 IPR002885 -
Gma05g01723 521 Pfam PPR repeat family 397 446 IPR002885 -
Gma05g01723 521 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 258 292 IPR002885 -
Gma05g01723 521 Pfam PPR repeat 470 500 IPR002885 -
Gma05g01723 521 Pfam PPR repeat 17 41 IPR002885 -
Gma05g01723 521 Gene3D Tetratricopeptide repeat domain 246 318 IPR011990 GO:0005515
Gma05g01723 521 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 363 397 IPR002885 -
Gma05g01723 521 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 4 519 - -
Gma05g01723 521 Gene3D Tetratricopeptide repeat domain 319 393 IPR011990 GO:0005515
Gma05g01723 521 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 468 502 IPR002885 -
Gma05g01723 521 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 433 467 IPR002885 -
Gma05g01723 521 Pfam PPR repeat 219 246 IPR002885 -
Gma05g01723 521 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 153 187 IPR002885 -
Gma05g01723 521 Gene3D Tetratricopeptide repeat domain 123 245 IPR011990 GO:0005515
Gma05g01723 521 Gene3D Tetratricopeptide repeat domain 6 100 IPR011990 GO:0005515
Gma05g01723 521 Gene3D Tetratricopeptide repeat domain 394 519 IPR011990 GO:0005515
Gma05g01723 521 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 223 257 IPR002885 -
Gma05g01723 521 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 118 152 IPR002885 -
Gma05g01723 521 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 398 432 IPR002885 -
Gma05g01723 521 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 4 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g01723 Gma-Chr5 38882432 38883997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g01723 141 513 Glycosyltransferase AT1G05670 28.272 2.80e-42 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g01723 - - gmx:100801230 975.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01723 05 38882432 38883997 Gma08g01209 08 10279036 10280870 GST