Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g01205 ATGCAGAAAAAAGGCAGGGTAGCAAAGAGAGGAGCAGGAATCCCACATCCTGAAGATATATATATTGGCTTGTTCCCGCCGTGCAGAGAATTTGACAAGTGCGGAATATCATGGCATAAGCCCACAGTTAAACGATCTTTTCAGAACCTTGAATCCATTGCTGGTGTCCAAACCAACAACCCCTCCATCATCGATCTTCCCCTCACTCAAGCTTTTCAGGCAGTGGTGAAAAGTCTTGGGGACAACGATGTGATGGTGATATTGGACAACCACATAACCCAGCCAGGGTGGTGCTGTAGTAACTCCGACGGCAATGGATTCTTCGGTGACAAATTTTTCAACCCAGACCAGTGGATATTGGGCCTCACCAAGATGGCCACCCTTTTCAATGGTGTCACTAATGTGGTGGGCATGAACTTGAGGAATGAGCTCCGAGGGCCCAAACAGAATGTCAACGATTGGTACAAGTACATGGTGAAAGGAGCAGAAGCGATTCATGCAGCAAATCCAGATGTTCTTGTCATTCTATCTGGCCTAAATTATGACAAAGACTTGTCTTTCATTCAAAAACGGCCAGTGAGCCTCACATTTAAGGGGAAATTAGTATATGAGGCACACTGGTATGCCTTCACTGATGGTCAAGCTTGGGTTAATGGTAATCCAAACCAGGTATGTGGACAAGTGGCAGGAAATATGATGAGAACCTCAGGCTTCTTGGTGAACCAAGGATGGCCATTGTTTATTAGTGAGTTTGGTGGAGACTTGAGAGGTACCAACGTGAACCACAATCGCTACCTTAATTGCTTCTTAGCACTGGCAGCTGAGCTTGACTTAGATTGGGCACTGTGGACACTCaatctctgccctccaacttccatttcgagGTCCAGGCATAACAAGAGGCAATCCATACAAATTGATATTCCATCCTTTGACTGGTTTGTGTGTCATAAGAAAGTCATTACTAGATCGATTGACATTGGGTCCTGCTATTTATCTGATGGTTGGAAATACACACCCCAGAAAATTCTATCAATAAAGGGTACTTACTTCTGCATGCAAGCGGGGAGTGAAGGGATGCCTGCGACACTTGGGATAATGTGCTCAGATCCTAACTCTAGATGGGAAATGATCTCAGATTCGAAGTTGCACCTTTCATCAAAACTCAGCGATGATTCTAATGTATGCCTAGATGTGGATGACAACAATAACATCGTGACCAATGCTTGCAAATGCTTAAGCAAAGATCGTACATGTGACCCTAGTAGCCAATGGTTCAAACCTATTGACAGCGGAAGCAGGTCAATGTTGACAACCTCAACGTCATCCATGCTATATAAATTCATCGGACCTTTTATGGAAGCCGTTTAG 1371 0.4354 MQKKGRVAKRGAGIPHPEDIYIGLFPPCREFDKCGISWHKPTVKRSFQNLESIAGVQTNNPSIIDLPLTQAFQAVVKSLGDNDVMVILDNHITQPGWCCSNSDGNGFFGDKFFNPDQWILGLTKMATLFNGVTNVVGMNLRNELRGPKQNVNDWYKYMVKGAEAIHAANPDVLVILSGLNYDKDLSFIQKRPVSLTFKGKLVYEAHWYAFTDGQAWVNGNPNQVCGQVAGNMMRTSGFLVNQGWPLFISEFGGDLRGTNVNHNRYLNCFLALAAELDLDWALWTLNLCPPTSISRSRHNKRQSIQIDIPSFDWFVCHKKVITRSIDIGSCYLSDGWKYTPQKILSIKGTYFCMQAGSEGMPATLGIMCSDPNSRWEMISDSKLHLSSKLSDDSNVCLDVDDNNNIVTNACKCLSKDRTCDPSSQWFKPIDSGSRSMLTTSTSSMLYKFIGPFMEAV 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g01205 456 PANTHER CELLULASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_5G14560) 318 444 - -
Gma08g01205 456 Gene3D Glycosidases 42 294 - -
Gma08g01205 456 PANTHER GLYCOSIDE HYDROLASE FAMILY 5 PROTEIN 38 285 - -
Gma08g01205 456 SUPERFAMILY Ricin B-like lectins 336 416 IPR035992 -
Gma08g01205 456 Pfam Cellulase (glycosyl hydrolase family 5) 56 286 IPR001547 GO:0004553|GO:0071704
Gma08g01205 456 PANTHER GLYCOSIDE HYDROLASE FAMILY 5 PROTEIN 318 444 - -
Gma08g01205 456 PANTHER CELLULASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_5G14560) 38 285 - -
Gma08g01205 456 SUPERFAMILY (Trans)glycosidases 54 287 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g01205 Gma-Chr8 10255439 10262018 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g01205 42 453 Glycoside Hydrolase AT1G13130 49.889 2.17e-147 430
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g01205 - - gmx:100790415 654.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g01205 08 10255439 10262018 Gma08g01205 08 10255439 10262018 ECH
Gma05g01719 05 38859385 38863425 Gma08g01205 08 10255439 10262018 GST