Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g01196 ATGGCATCAACAATATCAGCAATGGCCATGATCAACGCCAAATGCGTCAACCCAAAGTTCCCCAACCCCACCAAGCTCGTACCATCAAAACCTTCCCTTCAGGTCAACCTTCCAAAGGGCCTAATAGCCTCACCCGAAAACACCAAACTTTCCACTGCGACAGCAATCGCAGGAGCAATATTCACAACCCTCGGAACCTGCGACGCCGCTTTCGCCGTTCAACAAATAGCCGACATAGCAGAAGGCGACAACCGCGGTCTGGCACTGTTGCTGCCCATAATTCCTGCAATAGGGTGGGTTCTGTTCAACATTCTGCAGCCGGCGCTGAACCAACTGAACCGCATGCGCAGCACCAAAGGCGTGATCATTGGGTTGGGGCTTGGCGGCTTGGCTGGCTTGGTGGCTGCGCCGCATGCATCGGCGGCGGCGGCTTCTGAAGTGGCGGCGATGGCTGAAGCTGCCTCGAACGACAACAGGGGACAGCTTCTGCTGTTTGTGGTTACGCCGGCTATTGCTTGGGTTCTTTACAACATCTTGCAGCCTGCTCTTAACCAGCTCAACAGGATGAGATCCCAGTGA 579 0.5509 MASTISAMAMINAKCVNPKFPNPTKLVPSKPSLQVNLPKGLIASPENTKLSTATAIAGAIFTTLGTCDAAFAVQQIADIAEGDNRGLALLLPIIPAIGWVLFNILQPALNQLNRMRSTKGVIIGLGLGGLAGLVAAPHASAAAASEVAAMAEAASNDNRGQLLLFVVTPAIAWVLYNILQPALNQLNRMRSQ 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g01196 192 Pfam Photosystem II protein Y (PsbY) 83 115 IPR009388 GO:0009523|GO:0015979|GO:0016021|GO:0030145
Gma08g01196 192 Pfam Photosystem II protein Y (PsbY) 157 189 IPR009388 GO:0009523|GO:0015979|GO:0016021|GO:0030145
Gma08g01196 192 Hamap Photosystem II protein Y [psbY]. 83 117 IPR009388 GO:0009523|GO:0015979|GO:0016021|GO:0030145
Gma08g01196 192 PANTHER PHOTOSYSTEM II CORE COMPLEX PROTEINS PSBY, CHLOROPLASTIC 1 192 - -
Gma08g01196 192 PANTHER PHOTOSYSTEM II CORE COMPLEX PROTEINS PSBY, CHLOROPLASTIC 1 192 IPR038760 GO:0009523
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g01196 Gma-Chr8 10210377 10210955 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g01196 K02723 - gmx:100779397 279.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g01196 08 10210377 10210955 Gma08g01196 08 10210377 10210955 ECH
Gma08g01196 08 10210377 10210955 Gma18g00107 18 849502 850109 PCT
Gma08g01196 08 10210377 10210955 Gma11g02470 11 39983780 39984756 PCT