Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g01366 ATGTTGCTTTTTGCGCGCAACATCGGTAGCAGGGCCTCACTCCGAGTAAGCTCCTTCCATTCCTCACCCCTTCAAAATCCTTTTCCCCTTTTCTTCACTCCTTCATCCCTCTCCTCTCAAAATTCAATTTTTGCTCGCCCCATGATTTGGTTCGCCAGTTTTCTGTGTGTTATGAGATACCCCTTTGTCTCAAAACCTTCTTTTGATGACATTGCTTCCGAATCAATGCGTAGTTTCTTGCAGCAGGACCGTCCCCACTTGTTTGATTCAGCATTGGTACCCATTTGGGTGTCTAAGGATTTGCTTAATCTGAAAGGGGACCCTAAATCAGCCCTGAAGTTCTTCAAGGAGGCAGGGGCTCGAGCCGGGTTTCGCCACGCCGCGGAGTCTTATTGCGTTTTGGCTCACATTTTGTTTTGTGGAATGTTTTATCTTGATGCCAGGAGTGTCATTAAAGAGTGGATTTTGTTGGGGAGGGAGTTTCCAGGTTGTGATTTCTTTGATATGCTGTGGTCTACTAGGAATGTTTGTAGGCCTGGTTTTGGAGTGTTTGATACTTTGTTTAGTGTTTTAGTGGATTTGGGGATGCTTGAGGAGGCCAAGGCAATGCTTTTGGAAGAAGAACAAGTTCATGGTTCTGCCAAAATTTTTACGTATAATATAGTGATAGGCTGTCTGGCCAGAGAAGGGGGCATAGAAACTGCCAGGAGTTTATTTGAAGAAATGAAAGCTCTGGGTCTTAGGCCAGACATTGTCACCTATAATCCTCTCATTTATGGGTATGGAAAGGTAGGGATGTTAACTGGAGCAGTCACTGTGTTTGAGGAAATGAAAGATGCAGGATGTGAACCAGATGTGATAACATACAATTCTCTTATTAATTTGAAAGAATTCCTCAAGCTTTTGAGCATGATACTGGAAGCAAATAAATTTTTTGTTGACATGATACATGTTGGTCTTCAACCCAATGAATTTACGTATACATCTCTAATTGATGCAAATTGTAAAATAGGTGATCTCAATGAAGCATTTAAACTGGAAAGTGAGATGCAGCAGGCTGGAGTTAACTTAAATATCGTCACCTACACTGCATTACTGGATGGTCTTTGTGAAGATGGAAGAATGAGAGAGGCAGAAGAATTATTTGGGGCATTGTTAAAAGCTGAATGGACTCTTAATCAGCAGATTTATACTTCCCTTTTTCATGGATATATCAAGGCTAAGATGATGGAGAAGGCAATGGATATTTTATAG 1254 0.4147 MLLFARNIGSRASLRVSSFHSSPLQNPFPLFFTPSSLSSQNSIFARPMIWFASFLCVMRYPFVSKPSFDDIASESMRSFLQQDRPHLFDSALVPIWVSKDLLNLKGDPKSALKFFKEAGARAGFRHAAESYCVLAHILFCGMFYLDARSVIKEWILLGREFPGCDFFDMLWSTRNVCRPGFGVFDTLFSVLVDLGMLEEAKAMLLEEEQVHGSAKIFTYNIVIGCLAREGGIETARSLFEEMKALGLRPDIVTYNPLIYGYGKVGMLTGAVTVFEEMKDAGCEPDVITYNSLINLKEFLKLLSMILEANKFFVDMIHVGLQPNEFTYTSLIDANCKIGDLNEAFKLESEMQQAGVNLNIVTYTALLDGLCEDGRMREAEELFGALLKAEWTLNQQIYTSLFHGYIKAKMMEKAMDIL 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g01366 417 TIGRFAM PPR: pentatricopeptide repeat domain 325 358 IPR002885 -
Gma05g01366 417 TIGRFAM PPR: pentatricopeptide repeat domain 217 251 IPR002885 -
Gma05g01366 417 TIGRFAM PPR: pentatricopeptide repeat domain 252 286 IPR002885 -
Gma05g01366 417 TIGRFAM PPR: pentatricopeptide repeat domain 360 391 IPR002885 -
Gma05g01366 417 Gene3D Tetratricopeptide repeat domain 100 300 IPR011990 GO:0005515
Gma05g01366 417 Pfam PPR repeat 396 417 IPR002885 -
Gma05g01366 417 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 303 417 - -
Gma05g01366 417 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 214 295 - -
Gma05g01366 417 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 358 392 IPR002885 -
Gma05g01366 417 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 250 284 IPR002885 -
Gma05g01366 417 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 323 357 IPR002885 -
Gma05g01366 417 Gene3D Tetratricopeptide repeat domain 301 417 IPR011990 GO:0005515
Gma05g01366 417 Pfam Pentatricopeptide repeat domain 237 295 IPR002885 -
Gma05g01366 417 PANTHER OS06G0565000 PROTEIN 214 295 - -
Gma05g01366 417 PANTHER OS06G0565000 PROTEIN 98 204 - -
Gma05g01366 417 PANTHER OS06G0565000 PROTEIN 303 417 - -
Gma05g01366 417 Pfam PPR repeat family 328 370 IPR002885 -
Gma05g01366 417 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 215 249 IPR002885 -
Gma05g01366 417 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 98 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g01366 Gma-Chr5 35310971 35312412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g01366 179 417 Glycosyltransferase AT1G05670 34.025 1.08e-35 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g01366 K17710 - gmx:100786756 473.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01366 05 35310971 35312412 Gma08g00851 08 6962397 6964652 GST