Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00520 ATGACGAGTCAATCGGCGAAGAACCTATTGGTTTTGTTGGGGCTGGGTTTAGCTGGAATAGTTCTAATCACCAGAAAGCTCAAGAAGTCTGTCAGAAAGGATTTGGGGGCTTTCATTGAGAAGCTTCAGCTGCTTCCTCCTCCCCAGCCTGCTCCTCCCAAGGCTCCCCATCCCCTCACCGCACTCACCTTCGCACTTTCCGACCTATTTGACATCGAAGGACACGTGTCGACTTTCGGGCATCCGGAGTGGGCTCGGACTCACGAACCCGCTTCTTCCACTGCTCCTGCTGTTTCCGCTCTCGTCGAAGGAGGTGCTACCTGCGTTGCAACTACCGTTCTCGATGACTTAGCTCTAGGTATTGGCGGTGAAAATAAGCATTATGGAACGCCCACCAACCCTGCTGTTCCTGCTCGAGTACCTGGTGGCTCCTCTAGTGGTGCTGCTGTCGCCGTTGCTGCCGATTTCGTTGACTTTGCACTGGGTATTGATACAGTTGGCGGGGTTAGAGTACCTGCTGGATTTTGTGGCATTCTAGGATTTCGACCTTCACATGGTGCTGTTTCTCATTTGGGAATCATACCTATTTCAACAAGTCTGGACACTGTTGgttggtttgcaaaggatcccaatatattgcgtcgagttggccatatacttttacaagcaccatttgcaatgcaacgcagtcctcggcaaatagttatagctgatgattgttttcagcatataaatgttcctcttgacaggagttctcaagtggtggtcaaaaccactgagaagctttttggaaggcaagtattgaagcatataaatcttggggactatttaagttctagagttccaagcttgaaggggtgctctggacagaaaacaaatggtgaagtgaaagcttccgcattaaaattacttgccaacattatgcaatccctacaaagGCATGAATTCAGACTTAAACATGATGAGTGGATGAACACAGTAAAACCTGAACTTCATCCTGGTGTTTCGGCACAATTGCATGAAAAATTCGAGGTATCTGATGCAGAGATTGAAAACTCTAAATCTGTTAGAAGTGAGATGTGTGCTGCTGTAAATTCACTTTTGAAGGACGAAGGAATTTTGGTTATCCCCACTGTAGCTGATCCTCCTCCAAAATTAGGTGGGAAGGAGATCCTATCAGAGGATTATCAGAGTCGTGCATTTAGTCTGTTAAGTATTGCTAGCATATCAGGTTGTTGTCAGGTCTCAATACCATTAGGATTTTATGACAAGTATCCTGTTTCGGTGTCCTTGATAGCTAGGCATGGTGGTGATCGATTTTTACTTGACACACTACAGACTGTGTATACAACTCTCCAAGAACAGGCTGATATTGCTTCCAAAAGCAAATCATCTGGAAATGCTGTCAGTAAGGAGCAATCTGCTGAAATTGCCAAAGAGAAGGGAAACCAAGCCTATAAAGATAAGCAGTGGCAAAAAGCCATTGGATTTTATACAGAAGCTATCAAACTCTGTGGTGACAATGCAACATATTATAGTAACAGGGCTCAAGCGTATCTAGGACTTGGAAGTTATCTTCAAGCTGTGGAGGATTGTACAAAAGCAATTAGTCTTGACAAAAAGAATGTGAAGGCCTATTTTCGTAGAGGTACAGCTAGAGAGATGCTAGGTTACTACAAGGAAGCAATTGATGATTTTAAACATGCCCTTGTACTTGAGCCAACCAACAAAAGGGCAGCTTCAGCTGCTGAAAGGTTGAGGAAGCTATTCCAGTAG 1776 0.3694 MTSQSAKNLLVLLGLGLAGIVLITRKLKKSVRKDLGAFIEKLQLLPPPQPAPPKAPHPLTALTFALSDLFDIEGHVSTFGHPEWARTHEPASSTAPAVSALVEGGATCVATTVLDDLALGIGGENKHYGTPTNPAVPARVPGGSSSGAAVAVAADFVDFALGIDTVGGVRVPAGFCGILGFRPSHGAVSHLGIIPISTSLDTVGWFAKDPNILRRVGHILLQAPFAMQRSPRQIVIADDCFQHINVPLDRSSQVVVKTTEKLFGRQVLKHINLGDYLSSRVPSLKGCSGQKTNGEVKASALKLLANIMQSLQRHEFRLKHDEWMNTVKPELHPGVSAQLHEKFEVSDAEIENSKSVRSEMCAAVNSLLKDEGILVIPTVADPPPKLGGKEILSEDYQSRAFSLLSIASISGCCQVSIPLGFYDKYPVSVSLIARHGGDRFLLDTLQTVYTTLQEQADIASKSKSSGNAVSKEQSAEIAKEKGNQAYKDKQWQKAIGFYTEAIKLCGDNATYYSNRAQAYLGLGSYLQAVEDCTKAISLDKKNVKAYFRRGTAREMLGYYKEAIDDFKHALVLEPTNKRAASAAERLRKLFQ 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00520 591 PANTHER OUTER ENVELOPE PROTEIN 64, CHLOROPLASTIC 1 591 - -
Gma08g00520 591 SUPERFAMILY Amidase signature (AS) enzymes 24 446 IPR036928 -
Gma08g00520 591 ProSiteProfiles TPR repeat profile. 543 576 IPR019734 GO:0005515
Gma08g00520 591 Pfam Amidase 56 209 IPR023631 -
Gma08g00520 591 Pfam Amidase 313 442 IPR023631 -
Gma08g00520 591 PANTHER AMIDASE 1 1 591 - -
Gma08g00520 591 SUPERFAMILY TPR-like 473 580 IPR011990 GO:0005515
Gma08g00520 591 ProSiteProfiles TPR repeat region circular profile. 543 576 - -
Gma08g00520 591 Gene3D Amidase signature (AS) domain 48 451 IPR036928 -
Gma08g00520 591 SMART tpr_5 543 576 IPR019734 GO:0005515
Gma08g00520 591 SMART tpr_5 475 508 IPR019734 GO:0005515
Gma08g00520 591 SMART tpr_5 509 542 IPR019734 GO:0005515
Gma08g00520 591 ProSiteProfiles TPR repeat profile. 509 542 IPR019734 GO:0005515
Gma08g00520 591 Pfam Tetratricopeptide repeat 509 542 IPR019734 GO:0005515
Gma08g00520 591 Pfam Tetratricopeptide repeat 544 576 IPR013105 -
Gma08g00520 591 Gene3D Tetratricopeptide repeat domain 459 574 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00520 Gma-Chr8 4278185 4284808 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00520 30 448 Acyl Lipid Metabolism Gene Families AT1G08980 50.355 4.16e-144 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00520 - - gmx:100786059 1096.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g00520 08 4278185 4284808 Gma08g00520 08 4278185 4284808 ECH
Gma05g02385 05 44670063 44676396 Gma08g00520 08 4278185 4284808 GST