Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00482 ATGACTATGGCATATTCCGGCATATTTCAGGGCTTCATCAGATTCAAAGCCATGTCGCGCCTTCGTTCCACTCCTCTCAGACCTTCTCTTCCCTCCATTCCTCTTCACCGCACCGCCATTCGCCTCCGCCATCACTCATGCTCCTTCGCGCTTCAAGTCGTCAAGAACACGCGCCAGAGGACCCTCAAGTTGCCGTTTTGGCACCAACGCAGCTCCACCTACGGTCGTTTCGCCTACCAGGATGTCTCCAGTGACGAATCCGATGTTGAATTCGCCTCTTCTCCCTCTCACAACCAACAACTGGGTGATTCAACTCACGAGAACATTGACGAGTGGAGATGGAAGCTCACCATGCTTATGCGCAACAAAGACGACCAAGAAGTGGTGTCCAGGGAGAAGAAGGACCGTCGCGATTTCGAGCAACTTTCCACTGTAGCTTCCAGGATGGGTTTGTATAGCCGGCAGTATGCAAGAGTTGTTGTGTTTAGCAAGGCGCCTTTGCCAAATTACCGCCCTGATTTGGATGATAAGCGTCCGCAAAGAGAGGTAGTCTTACCACTTGGTGTTCATAAAGAAGTAGACGCTCATCTCCTTGCCCATCTTTCACAAAAGGCTAGAAACAAGTGGGGTTCTTTGAGTGATTCCTTGCATAAATCAAGGGATTCTAGAAGCATCCCAGCCAATGAAGGAATGTATGAACAACCAGAGCCCATGACCCATAATAGTGTGGTCAAGGAGAAAATCCTTGATCGAAAAAGTTTGCAACTGCTTCATCGGCAACATGATTGGCAGGAGTCTCCTGAAGGGCAAAAGATGCTTGAATTTCGTAGAAGTCTTCCTGCTTTCAAAGAGAAGGATGCATTTCTGAGAGTTATTTCACAGAATCAGGTCGTTGTTGTCTCAGGTGAAACTGGTTGTGGTAAGACCACACAACTTCCTCAATACATATTAGAATCTGAGACTGAAGCGGCACGTGGAGCTGTATGTAACATCATTTGTACTCAGCCTAGAAGAATATCTGCTATGTCTGTTTCTGAAAGAGTTGCAGCAGAACGTGGGGAGAAATTGGGAGAATCTGTTGGATACAAAGTTCGTCTGGAGGGTATGAAAGGGAGAGATACTCGTCTTCTTTTTTGCACCACGGGTGTATTATTGCGGAGACTGCTTGTGGATAGGAATTTAAAAGGTGTAACTCATGTTATTGTTGATGAAATTCATGAACGTGGAATGAACGAAGATTTTCTTCTCATTGTCCTGAAGGAACTTCTCCCTCATCGCCCTGATTTGAGGTTGATTTTGATGAGTGCTACCTTAAATGCTGAGCTTTTTTCTTCATACTTTAATGGTGCTCCAACTATGCATATTCCTGGTTTTACATTTCCAGTTCGAGCACATTTTCTTGAGGATATTCTGGAAAGGACTGGATATCGGTTGACACCTTCTAATCAAATTGATGACTATGGTCAAGAGAAAACATGGAAAATGCAAAAGCAAGCTCAAGCTTTCAGAAAAAGAAAGAGCCAGATTGCTTCTGCTGTTGAGGATGCTTTAGAAGTTGCAGAATTTAAGGGGTATAGCCTACGCACTCGAGATTCGTTGTCCTGCTGGTGCCCTGACTCAATTGGTTTTAACCTTATTGAACATGTGCTTTGCCACATTGTTAAGAATGAAAGGCCAGGTGCTGTTTTGGTTTTTATGACTGGTTGGGATGATATAAACTCTTTGAAGGATCAACTTCAAGTTCATCCTTTGTTGGGTGATCATAGCCAAGTATTGATTCTTGCATGCCATGGCTCCATGGCCAGCTCTGAGCAGAGGTTGATATTTGAAAATCCTGAAGGAGGGGTGAGGAAAATTGTTCTAGCAACTAACATGGCTGAGACTAGTATTACCATCAATGATGTTGTCTTTGTGGTTGACATTGGAAAAGCAAAAGAAACATCATATGACGCCTTAAATAACACTCCTTGTTTGCTTCCATCTTGGATCTCAAAAGCTGCTGCCCGGCAGAGAAGAGGAAGGGCTGGTCGTGTTCAGCCTGGTGAATGCTACCATCTTTATCCCAGATGTGTTTATGATGCTTTTGCTGATTATCAATTGCCAGAGCTTTTGAGAACACCTTTGCAGTCCTTATGTCTGCAAATCAAAACTCTACAACTTGGAAGCATCTCTGAGTTTTTATCTAGAGCTCTACAGCCACCAGAGCCTCTATCGGTTCAAAATGCTATTGATTATTTGAAGATTATTGGGGCCTTAGACGAGAATGAAAATTTAACAGTTTTAGGGCACAAATTGGCAATGCTTCCTGTGGAGCCCAAACTTGGCAAGATGCTCATTTTGGGAGCAATCTTCAAGTGTTTGGATCCCATAATGACAGTTGTTGCTGGTCTTAGTGTAAGAGATCCATTTGTGATGCCGTCTGACAAGAAGGATCTTGCAGAGTCTGCCAAAGCCCAATTAGCTGCTCGTGGCTATAGTGATCATCTGGCACTCATCCGGGCTTACGAGGGTTGGAGAGATGCTGAAGCTCAGCAAGCTGGTTACGAGTACTGCTGGCGGAATTTTCTTTCTTCTCAAACACTTAGGGCCATTGACTCTCTTCGAAAGCAATTCTTTTATTTGCTCAAAGATATTGGTCTGGTCAATAACAATTCTGAAACCTACAATACATGGAGTCATGAAGAGCATCTACTCCGAGCAGTCATTTGTGCGGGTTTGTTTCCTGGAATATCCTCTGTTGTGAACAAAGATAAGTCAATAGCGCTGAAAACAATGGAGGATGGTCAGGTTCTTTTGTATTCTAGCTCTGTAAATGGTTGTGTCTCCCGAATTCCATTCCCATGGTTAGTGTTTAATGAAAAGGTGAAAGTGAATTCAGTATTTCTTAGGGATTCAACTGGAATATCAGATTCAGTGCTTCTCTTATTTGGTGGGAATGTATCCAGAGGTGGACTAGATGGTCACCTGAAAATGTTGGGAGGGTATTTGGAGTTTTTCATGAAACCAGAATTAGCCAAGACTTACTTGAGCTTAAAGATGGAACTGGAAGAACTGATACAGAAAAAACTTTTGGATCCCATGTTGGAAACACAATCGCATAGTGAGCTGCTTTCTGCTGTTAGATTGTTGGTATCAGAGGATCATTGTGATGGGAGATTTGTCTTTGGTCGCCAGGTCCTACCACAATCAAAGAAGGAAACAAACTCCAAAACTGGTGGTGGAGCTGAGGGTAAAAATTATAAAAATCATCTTCAAGCATTCCTTAACAGGGCTGGACATGATTCACCAACTTACAAAACAAAGGAGCTGAAAAACAACCAATTCCGTACTACTGTCGTATTTAATGGGTTGAATTTTGTTGGTCAGCCATGCAGCAGCAAAAAATTAGCAGAAAAATCTGCTGCTGCTGAGGCTCTATTATGGATAAAAGGGGATGGCCATTCATCTGATGATATTGACCATGCATCAGTGCTTTTGAAAAAGAGCAACAAGAAAAGTAGGAAAAATTCGTTTAGTGGTGCTAAATGGAGTTGA 3534 0.4307 MTMAYSGIFQGFIRFKAMSRLRSTPLRPSLPSIPLHRTAIRLRHHSCSFALQVVKNTRQRTLKLPFWHQRSSTYGRFAYQDVSSDESDVEFASSPSHNQQLGDSTHENIDEWRWKLTMLMRNKDDQEVVSREKKDRRDFEQLSTVASRMGLYSRQYARVVVFSKAPLPNYRPDLDDKRPQREVVLPLGVHKEVDAHLLAHLSQKARNKWGSLSDSLHKSRDSRSIPANEGMYEQPEPMTHNSVVKEKILDRKSLQLLHRQHDWQESPEGQKMLEFRRSLPAFKEKDAFLRVISQNQVVVVSGETGCGKTTQLPQYILESETEAARGAVCNIICTQPRRISAMSVSERVAAERGEKLGESVGYKVRLEGMKGRDTRLLFCTTGVLLRRLLVDRNLKGVTHVIVDEIHERGMNEDFLLIVLKELLPHRPDLRLILMSATLNAELFSSYFNGAPTMHIPGFTFPVRAHFLEDILERTGYRLTPSNQIDDYGQEKTWKMQKQAQAFRKRKSQIASAVEDALEVAEFKGYSLRTRDSLSCWCPDSIGFNLIEHVLCHIVKNERPGAVLVFMTGWDDINSLKDQLQVHPLLGDHSQVLILACHGSMASSEQRLIFENPEGGVRKIVLATNMAETSITINDVVFVVDIGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRCVYDAFADYQLPELLRTPLQSLCLQIKTLQLGSISEFLSRALQPPEPLSVQNAIDYLKIIGALDENENLTVLGHKLAMLPVEPKLGKMLILGAIFKCLDPIMTVVAGLSVRDPFVMPSDKKDLAESAKAQLAARGYSDHLALIRAYEGWRDAEAQQAGYEYCWRNFLSSQTLRAIDSLRKQFFYLLKDIGLVNNNSETYNTWSHEEHLLRAVICAGLFPGISSVVNKDKSIALKTMEDGQVLLYSSSVNGCVSRIPFPWLVFNEKVKVNSVFLRDSTGISDSVLLLFGGNVSRGGLDGHLKMLGGYLEFFMKPELAKTYLSLKMELEELIQKKLLDPMLETQSHSELLSAVRLLVSEDHCDGRFVFGRQVLPQSKKETNSKTGGGAEGKNYKNHLQAFLNRAGHDSPTYKTKELKNNQFRTTVVFNGLNFVGQPCSSKKLAEKSAAAEALLWIKGDGHSSDDIDHASVLLKKSNKKSRKNSFSGAKWS 1177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00482 1177 CDD DEXHc_RHA-like 295 455 - -
Gma08g00482 1177 MobiDBLite consensus disorder prediction 212 235 - -
Gma08g00482 1177 SUPERFAMILY dsRNA-binding domain-like 1077 1148 - -
Gma08g00482 1177 Gene3D - 1058 1145 - -
Gma08g00482 1177 SMART DRBM_3 1080 1143 IPR014720 -
Gma08g00482 1177 SMART ultradead3 277 470 IPR014001 -
Gma08g00482 1177 SMART ha2_5 741 832 IPR007502 GO:0004386
Gma08g00482 1177 Pfam Helicase associated domain (HA2) 742 817 IPR007502 GO:0004386
Gma08g00482 1177 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL 65 1078 - -
Gma08g00482 1177 MobiDBLite consensus disorder prediction 1158 1177 - -
Gma08g00482 1177 SMART helicmild6 573 679 IPR001650 -
Gma08g00482 1177 Pfam DEAD/DEAH box helicase 289 440 IPR011545 GO:0003676|GO:0005524
Gma08g00482 1177 Gene3D - 232 457 IPR027417 -
Gma08g00482 1177 Gene3D - 542 697 IPR027417 -
Gma08g00482 1177 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 289 456 IPR014001 -
Gma08g00482 1177 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 898 980 IPR011709 -
Gma08g00482 1177 PANTHER ATP-DEPENDENT RNA HELICASE 65 1078 - -
Gma08g00482 1177 Pfam Helicase conserved C-terminal domain 547 678 IPR001650 -
Gma08g00482 1177 Pfam Double-stranded RNA binding motif 1080 1140 IPR014720 -
Gma08g00482 1177 Gene3D - 721 824 - -
Gma08g00482 1177 CDD SF2_C_RHA 536 687 - -
Gma08g00482 1177 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 545 719 IPR001650 -
Gma08g00482 1177 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 283 879 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00482 Gma-Chr8 4013817 4023121 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00482 K14442 - gmx:100791006 2317.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g00482 08 4013817 4023121 Gma08g00482 08 4013817 4023121 ECH
Gma05g02354 05 44438646 44449250 Gma08g00482 08 4013817 4023121 GST