Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g02354 ATGCCTATGACCTATTCCGGCATATTTCAGGGCTTCATCAGATTCAAAGCCACGTCGCGGCTTCGTTCCGCTCCTCTCAGACATTCTCTTCCCTCCATTTCATCCGCTCCTTTTCACCGCACCGCCATTCGCCTCCGCCACCACTCCTGCTCCGCCGCGCTTCAAGTCGTCAAGAACACGCGCCAGAGGACCTTCAAGTTTCCGTTTTGGCACCAACGCAGCTCCACCTATGGTCGTTTCGCCTACCAGGACGTCTCCAGTGACGAATCCGATGTCGAATTCGCGTCTTCTCCCTCTCACAACCAACAACTGGGTGATTCAACTCACGAGAACATTGACGATTGGAGATGGAAGCTCACCATGCTTATGCGCAACAAAGACGAACAAGAAGCGGTGTCCAGGGAGAAGAAGGACCGTCGCGATTTCGAGCAACTTTCCACTTTAGCTACCAGGATGGGTTTGTATAGCCGGCAGTATGCAAGAGTTGTTGTGTTTAGCAAGGCGCCTTTGCCAAACTACCGCCCTGATTTGGATGATAAGCGTCCACAAAGAGAGGTAGTCTTACCACTTGGTGTTCATAAAGAAGTAGACGCTCATCTCCTTGCCCATCTTTCACAAAAGGCTAGAAACAAGTGGGATTTTATGGAAGATTCCTTGCATAACTCAAGTGATTCTAGAAGCATTCCAGCCAATGAAAGAATGTATGAACAGCCAGAGCCCGTGACCCATAATAGTGTTGTCAAGGAGAAAATCCTTCAACGAAAAAGTTTGCAACTGCATCATCAGCAACAGGATTGGCAGGAGTCTCCTGAAGGGCAAAAGATGCTTGAATTTCGTAGAAGTCTTCCTGCTTTCAAAGAGAAGGATGCATTTCTGAGAGTTATTTCACAGAGTCAGGTCGTCGTTGTCTCAGGTGAAACTGGTTGTGGTAAGACCACACAACTTCCTCAATACATATTAGAATCTGAGATTGAAGCTGCACGTGGAGCTGTATGTAACATAATCTGTACTCAGCCTAGAAGAATATCTGCTATGTCTGTTTCTGAAAGAGTTGCAGCAGAGCGTGGGGAGAAATTGGGAGAATCTGTTGGATACAAAGTTCGCCTGGAGGGTATGAAAGGGAGAGATACTCGTCTTCTTTTTTGCACCACAGGTGTATTATTGCGGAGATTGCTTGTGGATAGGAATTTAAAAGGTGTAACTCATGTTATTGTTGATGAAATTCATGAACGTGGAATGAATGAAGATTTTCTTCTCATTGTCTTGAAGGAACTTCTCCATCATCGTCCTGATTTGAGGTTGATTTTGATGAGTGCAACCTTAAATGCTGAGCTATTTTCTTCATACTTTAATGGTGCTCCAACTATGCATATTCCTGGTTTTACATTTCCAGTTCGAGCACATTTTCTTGAGGACATTCTGGAAAGGACTGGATATCGATTGACACCGTATAATCAAATTGATGACTATGGTCAAGAAAAAACATGGAAAATGCAGAAGCAAGCTCAAGCTTTCAGAAAAAGAAAGAGCCACATTGCTTCTGCTGTTGAGGATGCTTTAGAAGTTGCAGAATTTAAGGGGTATAGCCTACGCACTCAAGATTCATTGTCCTGCTGGTACCCTGACTCAATTGGTTTTAACCTTATTGAACATGTGCTTTGCCATATTGTTAAGAATGAAAGGTCAGGTGCTGTTTTGGTTTTTATGACTGGTTGGGATGATATAACCTCTTTGAAGGATCAACTTCAAGCTCATCCTTTGTTGGGTGATCAGAGCCGAGTATTGCTTCTTGCATGCCACGGCTCCATGGCCAGCTCTGAGCAGAGGTTGATATTTGAAAATCCTGAAGGAGGGGTGAGGAAAATTGTTCTTGCAACTAACATGGCTGAGACTAGTATTACCATCAATGATGTTGTCTTTGTGGTTGACATTGGAAAAGCAAAAGAAACATCATATGATGCATTAAATAACACTCCTTGTTTGCTTCCATCTTGGATATCAAAAGCTGCTGCTCGGCAGAGAAGAGGAAGGGCTGGTCGTGTTCAACCTGGTGAATGCTACCATCTTTATCCCAGATGTGTTTATGATGCTTTTGCTGATTATCAATTGCCAGAGCTTTTGAGAACACCTTTGCAGTCCTTATGTCTGCAAATCAAAACTCTACAACTTGGAAGCATCTCTGAGTTTTTATCTAGAGCTCTACAGCCACCAGAGCCTCTATCGGTTCAAAATGCTATTGAATATTTGAAGATTATTGGGGCCTTAGATGAGAATGAAAATTTAACAGTTTTAGGGCACAAATTGGCAATGCTTCCTGTGGAGCCCAAACTTGGCAAGATGCTCATTTTGGGAGCTATCTTCAAGTGTTTGGATCCCATAATGACTATTGTTGCTGGTCTTAGTGTAAGAGATCCATTTGTAATGCCGTCTGACAAGAAGGATCTTGCAGAGTCTGCCAAAGCCCAATTTGCTGCTCGTGACTATAGTGATCATCTTGCACTCATCCGGGCTTATGATGGTTGGAGAGATGCTGAAGCGCAGCAAGCTGGTTACGAGTACTGTTGGCGAAATTTTCTTTCTTCTCAAACACTTAGGGCCATTGACTCTCTTCGAAAGCAATTCTTTTATTTGCTCAAAGATATTTGTCTGGTTAATAACAATTCTGAAACCTACAATACATGGAGTCATGAAGAGCATCTACTCCGAGCAGTCATCTGTGCGGGTTTGTTTCCCGGAATATCCTCTGTTGTGAACAAAGATAAGTCAATAGCACTGAAAACAATGGAGGATGGTCAGGTTCTTTTGTATTCTAGCTCTGTAAATGGTTGTGTACCCCGAATTCCATTCCCATGGTTAGTGTTTAATGAAAAGGTGAAAGTGAATTCAGTATTCCTTAGGGATTCAACTGGTATATCTGATTCAGTGCTTCTCTTATTTGGTGGGAATGTATCCAGAGGTGGACTAGATGGTCACCTGAAAATGTTGGGAGGGTATTTGGAGTTTTTCATGAAACCAGAATTAGCCAAGACTTACTTGAGCTTAAAGATGGGACTGGAAGAACTGATACAGAAAAAACTTTTGGATCCCATGTTGGAAACACAATCGCATAGTGAACTTCTTTCAGCTGTTAGATTGTTGGTATCAGAGGACCATTGTGATGGGAGATTTGTCTTTGGTCGCCAGGTCCTACCACAATCAAAGAAGGAAACAAACTCCAAAACTGGTGGTGTAGCTGAGGAGAAAAATTATAAAAATCACCTTCAAGCATTCCTTAACAGGGCTGGACATGATTCACCAACTTACAAAACAAAGGAGCTGAAAAACAACCAATTTCGTTCTACTGTCATATTCAATGGGTTGAATTTTGTTGGTCAGCCATGCAGCAGCAAAAAGTTAGCAGAAAAATCTGCTGCTGCTGAGGCTCTTCTATGGTTAAAAGGGGATAGCCATTCGTCTGATGATATTGACCATGCATCAGTGCTTTTGAAAAAGAGCAACAAGAAAAGTAGGAAAAATTCGTTTAGCAGTGCTAAATGGAGTTGA 3543 0.4265 MPMTYSGIFQGFIRFKATSRLRSAPLRHSLPSISSAPFHRTAIRLRHHSCSAALQVVKNTRQRTFKFPFWHQRSSTYGRFAYQDVSSDESDVEFASSPSHNQQLGDSTHENIDDWRWKLTMLMRNKDEQEAVSREKKDRRDFEQLSTLATRMGLYSRQYARVVVFSKAPLPNYRPDLDDKRPQREVVLPLGVHKEVDAHLLAHLSQKARNKWDFMEDSLHNSSDSRSIPANERMYEQPEPVTHNSVVKEKILQRKSLQLHHQQQDWQESPEGQKMLEFRRSLPAFKEKDAFLRVISQSQVVVVSGETGCGKTTQLPQYILESEIEAARGAVCNIICTQPRRISAMSVSERVAAERGEKLGESVGYKVRLEGMKGRDTRLLFCTTGVLLRRLLVDRNLKGVTHVIVDEIHERGMNEDFLLIVLKELLHHRPDLRLILMSATLNAELFSSYFNGAPTMHIPGFTFPVRAHFLEDILERTGYRLTPYNQIDDYGQEKTWKMQKQAQAFRKRKSHIASAVEDALEVAEFKGYSLRTQDSLSCWYPDSIGFNLIEHVLCHIVKNERSGAVLVFMTGWDDITSLKDQLQAHPLLGDQSRVLLLACHGSMASSEQRLIFENPEGGVRKIVLATNMAETSITINDVVFVVDIGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRCVYDAFADYQLPELLRTPLQSLCLQIKTLQLGSISEFLSRALQPPEPLSVQNAIEYLKIIGALDENENLTVLGHKLAMLPVEPKLGKMLILGAIFKCLDPIMTIVAGLSVRDPFVMPSDKKDLAESAKAQFAARDYSDHLALIRAYDGWRDAEAQQAGYEYCWRNFLSSQTLRAIDSLRKQFFYLLKDICLVNNNSETYNTWSHEEHLLRAVICAGLFPGISSVVNKDKSIALKTMEDGQVLLYSSSVNGCVPRIPFPWLVFNEKVKVNSVFLRDSTGISDSVLLLFGGNVSRGGLDGHLKMLGGYLEFFMKPELAKTYLSLKMGLEELIQKKLLDPMLETQSHSELLSAVRLLVSEDHCDGRFVFGRQVLPQSKKETNSKTGGVAEEKNYKNHLQAFLNRAGHDSPTYKTKELKNNQFRSTVIFNGLNFVGQPCSSKKLAEKSAAAEALLWLKGDSHSSDDIDHASVLLKKSNKKSRKNSFSSAKWS 1180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g02354 1180 SMART ha2_5 744 835 IPR007502 GO:0004386
Gma05g02354 1180 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 901 983 IPR011709 -
Gma05g02354 1180 Pfam Helicase conserved C-terminal domain 550 681 IPR001650 -
Gma05g02354 1180 Pfam DEAD/DEAH box helicase 292 443 IPR011545 GO:0003676|GO:0005524
Gma05g02354 1180 Gene3D - 724 826 - -
Gma05g02354 1180 PANTHER ATP-DEPENDENT RNA HELICASE 68 1092 - -
Gma05g02354 1180 MobiDBLite consensus disorder prediction 1160 1180 - -
Gma05g02354 1180 SUPERFAMILY dsRNA-binding domain-like 1080 1151 - -
Gma05g02354 1180 Pfam Helicase associated domain (HA2) 745 831 IPR007502 GO:0004386
Gma05g02354 1180 Gene3D - 234 460 IPR027417 -
Gma05g02354 1180 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 285 912 IPR027417 -
Gma05g02354 1180 Gene3D - 544 700 IPR027417 -
Gma05g02354 1180 SMART ultradead3 280 473 IPR014001 -
Gma05g02354 1180 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 292 459 IPR014001 -
Gma05g02354 1180 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 548 722 IPR001650 -
Gma05g02354 1180 CDD SF2_C_RHA 539 690 - -
Gma05g02354 1180 SMART DRBM_3 1083 1146 IPR014720 -
Gma05g02354 1180 Gene3D - 1064 1150 - -
Gma05g02354 1180 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1082 1147 IPR014720 -
Gma05g02354 1180 SMART helicmild6 576 682 IPR001650 -
Gma05g02354 1180 CDD DEXHc_RHA-like 305 458 - -
Gma05g02354 1180 Pfam Double-stranded RNA binding motif 1083 1145 IPR014720 -
Gma05g02354 1180 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL 68 1092 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g02354 Gma-Chr5 44438646 44449250 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g02354 K14442 - gmx:100806141 2291.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g02354 05 44438646 44449250 Gma05g02354 05 44438646 44449250 ECH
Gma05g02354 05 44438646 44449250 Gma08g00482 08 4013817 4023121 GST