Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00402 ATGAGTAGTAGTAAGAAAAGGTTCATTCCTATTAATCTGGAAGATGCTGCAGTGGACTTGTTAAACCATGTGGTGAAGTTGAAGGAGAAGGGATGGATTCCACTCTTCATTCCACTCATTTTGATTGCTTGGGCTATTCACAGATGGCTCTTCTCTTTCTCCAATTGGCTTCCCCTTGTACTTGCTCTATGGGCATCTATGCAATATGGAAATTATCAGCGCAAACTACTTGAGGAAGAGTTGAATAAGAAATGGAAACGGATCCTACTCAACACCTCGCCCATGACACCATTAGAACACTGTGAGTGGTTGAATCTGCTATTGACACAAATTTGGTCCAACTATTTTAACCCAAAGTTCTCAAGAAGGTTAAAAGCCATAGTTGAGAAACGGTTAAAGCTCCGGAAACCAAGATTTATAGAAAAGGTTGAGGTCCAAGAGTTTTCACTTGGATCATGCCCTCCAAGTTTGGGTCTTCAAGGGATGCGATGGTCAACCTCTGGTGGTCAGCGAGTCCTCAAAACGAGTTTCGATTGGGACACGAGTGAAATGAGCATTTTGATGCTTGCTAAGCTTTCCGTTGGAACAGCCAGAATTGTGATTAACAGTCTTCATATTAAGGGTGATCTTCTGGTGACACCAATTCTAGATGGAAAAGCACTTTTGTATTCCTTTCTATCAATACCTGAGGTGAAAATAGGAATTGCCTTTGGAAGTGGAGCAAGCCAATCAGCCACTGAGTTTCCTGGTGTTTCTTCATGGCTGAATAAACTTTTTACTGATACCTTAGCTAAAACCATGGTGGAACCTCGCCGTCGTTGTTTCAGTTTGCCTGTGGTTGATTTGAGGAAAACTGCTGTTGGAGGCATTATATATGTGTCAGTGATTTCAGCAAACAAACTTTCTAGGAGTTGCTTCAAGAGTAGCCCATCTTTGAGGCAACAAAATAGCACAATCAATGGATATTCAGAAAACAACCTGGATGACAATGACCTACAGACATTTGTAGAGGTAGAAGTGGAGGAATTGACAAGGAGGACGGGTCTGAGCCATGGTTCAAATCCAATGTGGGATACAACATTTAATATGGTTTTACATGATAATACAGGAATTGTTCGCTTCAATCTTTATGAGTGTCCCTCAAGTGGTGTTAAGTGTGACCACCTAGCAAGTTGTGAAATCAAGATGAGGCATGTTGAAGATGATTCAACAATAATGTGGGCAATAGGACCTGATTCTAGTGCAATAGCAAAGCATGCAAAGTTTTGCGGAGATGAAGTTGAAATGGTTGTCCCATTTGAGGGGACCAACTCAGTAGAGTTAAAGGTGAAGTTTGTAGTAAAAGAGTGGCAGTTTTCTGATGGTTCGCATAGCTTGAACAGCCTCCGTTCTAATTCTCAGCGATCACTTATTGGATCATCAAGTCTTCTGTCAAAAACTGGAAGGAAACTTAAGATAACTGTTGTAGAAGCAAAGGATCTCGCTGCAAAAGACAAATCTGAAAAAATTAACCCATACATTAAATTGCTATATGGAAAGGTTGTCAAGAAAACAAAGGTTGCTCTTACTACTACTAGTACTACTACAAATCCTGTCTGGAATCAATCATTTGAATTTGATGAGAATGATGGTGATGAATACCTAAATGTAAAATGCTTTAGTGAAGAAATTTTTGGAGATGAAAATATTGGTAGTGCAAATGTAAATTTGGAAGGACTGGGGGATGGGTCAATCAAGGTTGAATGGATCCCTCTTGAAGGAGTGAGTTCGGGTGAATTGAAGCTTAAAATTGAAGTAGTTAAGGTGGAGGACCAAGAAGGATCAAGGGGTTCAACTAATGGTTGGATAGAACTTGTTGTGATTGAAGCGAGGGATCTTATTGCTGCTGATCTTCGAGGGACAAGTGATCCTTATGTGAGGGTAAACTACGGAAACTCGAAGAAAAGGACAAAGGTTATACACAAAACACTCAACCCTCGTTGGAACCAGACATTAGAGTTCCTTGACGATGGCAGTCCCTTGATACTGCATGTTAAGGACCACAATGCTTTACTACCCGAATCAAGTATAGGCGAAGGTGTTGTAGAATATCAAAGGTTGCCTCCAAACCAGATGTCTGACAAGTGGATACCTCTGCAAGGGGTGAAAAGTGGTGAGATCCACATCCAAATTACAAGAAAAGTTCCAGAAATGCAAACAAGACATACTCTAGACTCTCAACCCTCTTCGTTAAGTAAATCACACCAAATTCCTACCCAGatgagagagatgatgaaaaagtttcgatcattaatagaggatgaaaatcTTGAAGGATTAACAACAACTTTGAGTGAGTTAGAAAGTCTAGAGGATACACAGGAAGGGTATATAACACAGTTGGAGACAGAGCAAATGCTTCTACTCAGCAAAATAAATGAACTGGGTCGGGAGATCATCAATTCTTCTTCCCGCGCTAGTAGTAGTCCTTCTCAAAGTGGAATTTGA 2487 0.3989 MSSSKKRFIPINLEDAAVDLLNHVVKLKEKGWIPLFIPLILIAWAIHRWLFSFSNWLPLVLALWASMQYGNYQRKLLEEELNKKWKRILLNTSPMTPLEHCEWLNLLLTQIWSNYFNPKFSRRLKAIVEKRLKLRKPRFIEKVEVQEFSLGSCPPSLGLQGMRWSTSGGQRVLKTSFDWDTSEMSILMLAKLSVGTARIVINSLHIKGDLLVTPILDGKALLYSFLSIPEVKIGIAFGSGASQSATEFPGVSSWLNKLFTDTLAKTMVEPRRRCFSLPVVDLRKTAVGGIIYVSVISANKLSRSCFKSSPSLRQQNSTINGYSENNLDDNDLQTFVEVEVEELTRRTGLSHGSNPMWDTTFNMVLHDNTGIVRFNLYECPSSGVKCDHLASCEIKMRHVEDDSTIMWAIGPDSSAIAKHAKFCGDEVEMVVPFEGTNSVELKVKFVVKEWQFSDGSHSLNSLRSNSQRSLIGSSSLLSKTGRKLKITVVEAKDLAAKDKSEKINPYIKLLYGKVVKKTKVALTTTSTTTNPVWNQSFEFDENDGDEYLNVKCFSEEIFGDENIGSANVNLEGLGDGSIKVEWIPLEGVSSGELKLKIEVVKVEDQEGSRGSTNGWIELVVIEARDLIAADLRGTSDPYVRVNYGNSKKRTKVIHKTLNPRWNQTLEFLDDGSPLILHVKDHNALLPESSIGEGVVEYQRLPPNQMSDKWIPLQGVKSGEIHIQITRKVPEMQTRHTLDSQPSSLSKSHQIPTQMREMMKKFRSLIEDENLEGLTTTLSELESLEDTQEGYITQLETEQMLLLSKINELGREIINSSSRASSSPSQSGI 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00402 828 ProSiteProfiles C2 domain profile. 462 583 IPR000008 -
Gma08g00402 828 ProSiteProfiles C2 domain profile. 589 710 IPR000008 -
Gma08g00402 828 SMART C2_3c 483 582 IPR000008 -
Gma08g00402 828 SMART C2_3c 290 408 IPR000008 -
Gma08g00402 828 SMART C2_3c 615 709 IPR000008 -
Gma08g00402 828 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 613 725 IPR035892 -
Gma08g00402 828 Gene3D C2 domain 603 727 IPR035892 -
Gma08g00402 828 Gene3D C2 domain 473 602 IPR035892 -
Gma08g00402 828 CDD C2 484 585 - -
Gma08g00402 828 Pfam C2 domain 616 712 IPR000008 -
Gma08g00402 828 Pfam C2 domain 483 585 IPR000008 -
Gma08g00402 828 Pfam C2 domain 290 402 IPR000008 -
Gma08g00402 828 CDD C2 616 712 - -
Gma08g00402 828 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 97 278 IPR031468 GO:0008289
Gma08g00402 828 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 482 603 IPR035892 -
Gma08g00402 828 PANTHER PLANT SYNAPTOTAGMIN 1 826 - -
Gma08g00402 828 PANTHER OS01G0128800 PROTEIN 1 826 - -
Gma08g00402 828 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 286 404 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00402 Gma-Chr8 3386805 3393861 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00402 484 789 Lipid Metabolism Gene Families AT3G61300 24.854 4.17e-15 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00402 - - gmx:100805496 1558.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g00838 07 8922452 8929474 Gma08g00402 08 3386805 3393861 ECH
Gma08g00402 08 3386805 3393861 Gma08g00402 08 3386805 3393861 ECH
Gma08g00402 08 3386805 3393861 Gma07g00838 07 8922452 8929474 PCT
Gma08g00402 08 3386805 3393861 Gma09g01698 09 42634985 42642659 PCT
Gma07g00838 07 8922452 8929474 Gma08g00402 08 3386805 3393861 PCT
Gma09g01698 09 42634985 42642659 Gma08g00402 08 3386805 3393861 PCT