LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma08g00242	ATGGCCATCCTGTCCCAATCCACCGCCAGCTTCTCCTTCGTCTCCACTCGGACCGATTCCACTCACCTAACTCGCTTCCCCTGCCGCGTCACCTTCCGAGCCCGCTCTCCCCCTCTCCGCCCCGCCCTCGTCTCTTCGCGCCTCAACTCCTCCAGGTCCCCCGACGCCGGCGGCTCCCTCTCGCCGGACAACGGCGGCGGCGACGTCGCCTACCAGCTCCACCACGACTTCTCTCCGCAGCGCCGTCGCCGCGGCTCGCCGGTCTTCGTCACGCTGCCGGTGAATTCCATCGGTCGGGATGGCCGTGTCGCGAGGCCCAAGGCGATGATGTTCTCGCTTAAGGCGCTTGCCACGGCCGGCGTGGAAGGCGTGGTTATTGAAATTTGGTGGGGATTGGTTGAGAAGAAGAAACCTAGGGTTTACGATTGGAGAGGGTATGAGGAACTCGTCGCGATGGCGTGCAAGTGTGGCCTTAAGGTTCGGGCGGTTCTCGCCTTTCATCAGCATGGCACGGGACCTGATGATCCCAATTGGATGCCACTTCCTCTATGGGTGCTTGATGAGATACAGAAAGATACAGAGTTAGCGTATTGTGACAGGTTTGGACAAAGAAATATTGAATACATTTCCCTTGGATGTGATATTCTGCCTGTGTTATGTGGGCGTTCTCCTATTCAAGCATATGCAGATTTTATGAGGAATTTTAGGGACACTTTTGAGTCTTTGCTTGGCGTTGTCATCACAGGTGTACAGATTGGCATGGGTCCTGGTGGTGAACTAAGATATCCTTCATTCTCTTCACAGGAGCCAAATTTGGCTTGGTCTCATGAACTTGGAGAGTTTCAGTGCTATGATAAGTATATGCTTGCTTCTCTGAATGCCTCTGCAAGAAATATTGGAAAGCGTGAATGGGGAAATGGTGGTCCATTTGGTAGTGAAAGTTTGATGCAAAATCCTGAGCATACTGATTTTTTCAGAAATGACGGTGGCTCTTGGGACACACCATATGGTAAATTTTTTCTTGAATGGTACTCAGATATGCTGCTGCTGCATGGGGAGAGGATTTGTAGGGAAGCTGAAACTATATTTAGGGGTACAGAAGTCCATATATCAGCAAAATTGGCTGCCATTCACTGGCATTATGCCATGCAATCCCACCCATCAGAGTTAACAGCTGGCTATTATAATACTTCTAACAGGGACGGATACTTACCCATTGCTCGTATGTTTAGCAAGTATGGATTCTCAATGTGCTGCTCTTGTTTTGAAATGCAAGATGCTGTAACGCAGAAGATCAATCCAGATGGTAGTCCTGAAGGTTTTCTTAGACAGCTTTTGCTGGTTGCTAGGCTCTGTGATATATCACTCGAAGGTCAAAATTTTTCAACTAATTTGGATGATGGTGCATTCACCCAGGTGCTTAAGATGTCAAAATTTTACTCAGATGGGATTGAGAAGCGACCTTTCTCATTCAACTTTGTAAGAATGGACAAAAGATTGTTTGAATCCCGAAATTGGGATCGGTTTACTCGTTTTGTGAGACAATTGTCTAATGGAAACATTTTTCGAGCCAGATTAAATTCTGTTCGTGAAGTACGGTTGAAGACCACACCAGTGGTAGCAGCAGTGGGACTGTTGTACCACCTATATCAGCACTCTTGA	1662	0.4832	MAILSQSTASFSFVSTRTDSTHLTRFPCRVTFRARSPPLRPALVSSRLNSSRSPDAGGSLSPDNGGGDVAYQLHHDFSPQRRRRGSPVFVTLPVNSIGRDGRVARPKAMMFSLKALATAGVEGVVIEIWWGLVEKKKPRVYDWRGYEELVAMACKCGLKVRAVLAFHQHGTGPDDPNWMPLPLWVLDEIQKDTELAYCDRFGQRNIEYISLGCDILPVLCGRSPIQAYADFMRNFRDTFESLLGVVITGVQIGMGPGGELRYPSFSSQEPNLAWSHELGEFQCYDKYMLASLNASARNIGKREWGNGGPFGSESLMQNPEHTDFFRNDGGSWDTPYGKFFLEWYSDMLLLHGERICREAETIFRGTEVHISAKLAAIHWHYAMQSHPSELTAGYYNTSNRDGYLPIARMFSKYGFSMCCSCFEMQDAVTQKINPDGSPEGFLRQLLLVARLCDISLEGQNFSTNLDDGAFTQVLKMSKFYSDGIEKRPFSFNFVRMDKRLFESRNWDRFTRFVRQLSNGNIFRARLNSVREVRLKTTPVVAAVGLLYHLYQHS	553

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma08g00242	553	PANTHER	BETA-AMYLASE	6	536	-	-
	Gma08g00242	553	PANTHER	-	6	536	IPR001554	GO:0000272\|GO:0016161
	Gma08g00242	553	Gene3D	Glycosidases	78	542	-	-
	Gma08g00242	553	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	120	134	IPR001554	GO:0000272\|GO:0016161
	Gma08g00242	553	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	141	159	IPR001554	GO:0000272\|GO:0016161
	Gma08g00242	553	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	163	184	IPR001554	GO:0000272\|GO:0016161
	Gma08g00242	553	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	255	277	IPR001554	GO:0000272\|GO:0016161
	Gma08g00242	553	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	332	351	IPR001554	GO:0000272\|GO:0016161
	Gma08g00242	553	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	368	384	IPR001554	GO:0000272\|GO:0016161
	Gma08g00242	553	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	385	396	IPR001554	GO:0000272\|GO:0016161
	Gma08g00242	553	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	403	426	IPR001554	GO:0000272\|GO:0016161
	Gma08g00242	553	MobiDBLite	consensus disorder prediction	43	58	-	-
	Gma08g00242	553	Pfam	Glycosyl hydrolase family 14	89	512	IPR001554	GO:0000272\|GO:0016161
	Gma08g00242	553	SUPERFAMILY	(Trans)glycosidases	85	549	IPR017853	-
	Gma08g00242	553	MobiDBLite	consensus disorder prediction	43	65	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma08g00242	Gma-Chr8	2065383	2068464	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma08g00242	36	547	Glycoside Hydrolase	AT3G23920	45.437	1.57e-151	445

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma08g00242	K01177		-	gmx:100787834	1144.8

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma08g00242	08	2065383	2068464	Gma08g00242	08	2065383	2068464	ECH
	Gma05g02135	05	42512054	42514847	Gma08g00242	08	2065383	2068464	GST