LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma05g02135	ATGGCGATCCTCTCTCAATCCACCGCCAGCTTCTCCTTCTCCTTCTCCTTCGTCTCCACTCGGACCGATTCCACTCGCCTAACTCGCTTCCCCTCCCGCGTCACCTTCCGAGCCCGCTCGCCCCCTCGCCGCCACGCCCTCGTCTCTTCGCGCCTCAACTCCTCCAGGTCCCCCGACGCCGGCGGCTCCCTGTCGCCGGACAACGGCAGCGGTGACGTCGCCTACCAGCTCCACCACGACTTCTCTCCGCGGCGCCGGCGCCGCGGCTCGCCGGTGTTCGTCACGCTGCCGGTGAATTCCGTCGGCCGGGAGGGCCGTGTCGCGCGGCCCAAGGCGATGATGTTCTCACTCAAGGCTCTCGCCACGGCCGGCGTGGAAGGCGTGGTTATTGAAATTTGGTGGGGATTGGTCGAGAAGAACAAACCTAGGGTTTACGATTGGAGAGGGTATGAGGAACTCGTCGCGATGGCGTGCAAGTGTGGCCTTAAGGTTCGAGTGGTTCTCGCCTTTCATCAGCATGGCACGGGACCTGATGATCCCAATTGGATACCTCTTCCTCTATGGGTGCTTGATGAGATACAGAAAGATATAGAGTTAGCGTATTGTGACAGGTTTGGAAGAAGAAATATTGAATACATTTCCCTTGGATGTGATATTCTTCCTGTGCTACATGGGCGTTCACCTATTCAAGCGTATGCAGATTTTATGAGGAATTTTAGGGACACTTTCGGGTCTTTGCTTGGTGTTATCATCACAGGTGTACAGATTGGCATGGGTCCTGGTGGTGAACTAAGATATCCTTCATTCTCTTCACAGGAGCCAAATTTGGCTTGGCCTCATGAACTTGGAGAGTTTCAGTGCTATGATAAGTATATGCTTGCTTCTCTGAATGCCTCTGCAAGAAATATTGGAAAGCGTGAATGGGGAAATGGTGGTCCATTTGGTAGTGGAAGTTTGATGCAAAATCCGGAGCATACTGATTTTTTCAAAAATGACGGTGGCTCTTGGGACACACCATATGGTAAATTTTTCCTTGAATGGTACTCAGATATGTTGCTGCTGCATGGGGAGAGGATTTGTAGGGAAGCTGAAACTATATTTAGGGGTTCGGAAGTCCATATATCAGCAAAATTGGCTGCCATTCACTGGCACTATGTCACGCAATCCCATCCATCAGAGTTAACAGCTGGTTATTATAATACTTCTAACAGGGATGGATACTTACCCATTGCTCGCATGTTTAGCAAGTATGGATTTTCAATGTGCTGCTCTTGTTTTGAAATGCAAGATGCTGTAATGCAGAAGATCAATCCAGATGGTAGTCCTGAAGGTTTTCTTAGACAGCTTTTGCTGGCTGCTAGGCTCTGTGATATATCACTCGAAGGTCAAAATTTTTCAACTAATTTGGATGATGGTGCATTCACCCAGGTGCTTAAGATGTCAAAATTTTACTCAGATGGGATTGAGAAGCGATCTTTCTCATTCAACTTTGTAAGAATGGACAAAAGATTGTTTGAATCCCGAAATTGGGATCGGTTTACTCGTTTTGTGAGACAAATGTCTAATGGAAACATTTTTCGAGCCAGATTAAATTCTGTTCGTGACGTACGGTTGAAGACCACACCAGTGGTAGCAGCAGTGGGACTATTGTATCACCTATATCAGCACTCTTGA	1674	0.4845	MAILSQSTASFSFSFSFVSTRTDSTRLTRFPSRVTFRARSPPRRHALVSSRLNSSRSPDAGGSLSPDNGSGDVAYQLHHDFSPRRRRRGSPVFVTLPVNSVGREGRVARPKAMMFSLKALATAGVEGVVIEIWWGLVEKNKPRVYDWRGYEELVAMACKCGLKVRVVLAFHQHGTGPDDPNWIPLPLWVLDEIQKDIELAYCDRFGRRNIEYISLGCDILPVLHGRSPIQAYADFMRNFRDTFGSLLGVIITGVQIGMGPGGELRYPSFSSQEPNLAWPHELGEFQCYDKYMLASLNASARNIGKREWGNGGPFGSGSLMQNPEHTDFFKNDGGSWDTPYGKFFLEWYSDMLLLHGERICREAETIFRGSEVHISAKLAAIHWHYVTQSHPSELTAGYYNTSNRDGYLPIARMFSKYGFSMCCSCFEMQDAVMQKINPDGSPEGFLRQLLLAARLCDISLEGQNFSTNLDDGAFTQVLKMSKFYSDGIEKRSFSFNFVRMDKRLFESRNWDRFTRFVRQMSNGNIFRARLNSVRDVRLKTTPVVAAVGLLYHLYQHS	557

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma05g02135	557	PANTHER	-	3	540	IPR001554	GO:0000272\|GO:0016161
	Gma05g02135	557	MobiDBLite	consensus disorder prediction	41	70	-	-
	Gma05g02135	557	Pfam	Glycosyl hydrolase family 14	93	516	IPR001554	GO:0000272\|GO:0016161
	Gma05g02135	557	Gene3D	Glycosidases	82	545	-	-
	Gma05g02135	557	PANTHER	BETA-AMYLASE	3	540	-	-
	Gma05g02135	557	MobiDBLite	consensus disorder prediction	47	64	-	-
	Gma05g02135	557	SUPERFAMILY	(Trans)glycosidases	89	552	IPR017853	-
	Gma05g02135	557	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	124	138	IPR001554	GO:0000272\|GO:0016161
	Gma05g02135	557	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	145	163	IPR001554	GO:0000272\|GO:0016161
	Gma05g02135	557	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	167	188	IPR001554	GO:0000272\|GO:0016161
	Gma05g02135	557	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	259	281	IPR001554	GO:0000272\|GO:0016161
	Gma05g02135	557	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	336	355	IPR001554	GO:0000272\|GO:0016161
	Gma05g02135	557	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	372	388	IPR001554	GO:0000272\|GO:0016161
	Gma05g02135	557	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	389	400	IPR001554	GO:0000272\|GO:0016161
	Gma05g02135	557	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	407	430	IPR001554	GO:0000272\|GO:0016161

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma05g02135	Gma-Chr5	42512054	42514847	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma05g02135	63	523	Glycoside Hydrolase	AT4G17090	48.380	3.79e-154	451

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma05g02135	K01177		-	gmx:100805981	1135.17

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma05g02135	05	42512054	42514847	Gma05g02135	05	42512054	42514847	ECH
	Gma05g02135	05	42512054	42514847	Gma08g00242	08	2065383	2068464	GST