Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00240 ATGCCAGGTCTCGTATCGGACGCCCAACCCCTCGGAATCTCCGTCCCGGACACACCCAGGCAATCCCAGAGAACCCCTTCTCCACTCCCCAAAAAACCACCCAGCCCATCTCCTTCTCGCTCCTCCAAAAAGAAAACTCCTGAAACCCCTCCGCTTCTCTCTGATGCCTCTCTCGACAACCCGGATCTCGGCCCATTCCTCCTTAAGTTGGCCCGCGACACCATTGCCTCGGGCGATGGGCCCTCCAAGGCCCTCGACTTCGCCATCCGGGCCTCCAAGTCCTTCGAGCGCTGCGCCGTCGAGGGCGAGCCCAGCCTCGACCTCGCCATGAGCCTCCACGTCCTCGCCGCCATCTACTGCAGCCTCGGACGCTTCGACGAAGCCGTCCCCGTCCTCGAACGCGCTATCCAAGTCCCCGACGTCGAACGCGGCGCCGATCACGCCCTCGCCGCCTTCTCCGGCTACATGCAGCTCGGCGACACCTTCTCCATGCTCGGCCAGGTCGACAGATCCATCTCCTGCTACGACCAAGGCCTCCAGATCCAGATCCAAGCCCTCGGCGACTCCGATCCCCGCGTCGGTGAAACTTGCCGATACTTAGCGGAGGCAAATGTGCAAGCAATGCAGTTTGATAAAGCAGAGGATCTGTGTAAGAAGACGTTGGAGATTCATCGCGCACATAGTGAACCAGCTTCGCTTGAGGAAGCTGCAGATAGGAGGCTGATGGCACTGATTTGTGAGGCAAAGGGAGATTATGAATCGGCGTTGGAGCATCTTGTGCTTGCTAGCATGGCCATGATTGCAAATGGTCAAGATAATGAGGTTGCATCAATTGATGTTAGCATTGGGAACATTTACATGTCGCTTTGTCGTTTTGACGAGGCGATTTTCTCATACCAGAAGGCGCTTACGGTGTTTAAGTCTGCCAAGGGTGAGAACCACCCTTCTGTTGCCTCTGTTTTTGTGAGGCTTGCTGATTTGTACCACAGGACTGGTAAGCTTCGCGAGTCAAAGTCTTACTGTGAGAATGCTCTTAGGATTTACTCAAAGCCTGTTCCGGGGACCACCGCAGAGGAGATTGCCGGTGGCTTGACAGAGATTTCAGCAGTTTTTGAATCTGTCGATGAGCCGGAGGAGGCGCTGAAGCTGTTGAACAGGGCAATGAAGTTGTTGGAGGATAAGCCAGGGCAGCAGAGCACTATTGCGGGGATTGAGGCACGAATGGGAGTGATGTATTACATGATTGGGAGGTATGAGGACTCAAGGAACTCGTTTGAGAGTGCTGTGGCGAAACTCAGGGCTAGTGGGGAGAGAAAGAGTGCCTTCTTTGGAGTTGTTTTGAACCAGATGGGGTTGGCATGTGTTCAACTGTTCAAGATTGATGAGGCTGCTGAGTTGTTTGAAGAAGCTAGGGGAATTCTTGAACAGGAGTGTGGCCCATGTCATCAGGATACTCTTGGGGTGTACAGCAACCTTGCAGCTACATATGATGCTATGGGAAGAGTGGGAGATGCGATTGAAATCTTAGAATATGTTCTCAAGCTGAGGGAGGAAAAGCTTGGGATAGCAAATCCTGATTTTGAAGATGAGAAGCGTCGTCTGGCAGAGCTTCTGAAAGAAGCAGGCAAGACACGGGACAGAAAAGCAAAATCTCTGGAAAACCTTATTGATCCTGGCTCAAAGCGGACGAAGAAGGAGGGGGCAAAGAGGTGGCCTGGTTTGGGGTTTAGAATTTAA 1737 0.532 MPGLVSDAQPLGISVPDTPRQSQRTPSPLPKKPPSPSPSRSSKKKTPETPPLLSDASLDNPDLGPFLLKLARDTIASGDGPSKALDFAIRASKSFERCAVEGEPSLDLAMSLHVLAAIYCSLGRFDEAVPVLERAIQVPDVERGADHALAAFSGYMQLGDTFSMLGQVDRSISCYDQGLQIQIQALGDSDPRVGETCRYLAEANVQAMQFDKAEDLCKKTLEIHRAHSEPASLEEAADRRLMALICEAKGDYESALEHLVLASMAMIANGQDNEVASIDVSIGNIYMSLCRFDEAIFSYQKALTVFKSAKGENHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYSKPVPGTTAEEIAGGLTEISAVFESVDEPEEALKLLNRAMKLLEDKPGQQSTIAGIEARMGVMYYMIGRYEDSRNSFESAVAKLRASGERKSAFFGVVLNQMGLACVQLFKIDEAAELFEEARGILEQECGPCHQDTLGVYSNLAATYDAMGRVGDAIEILEYVLKLREEKLGIANPDFEDEKRRLAELLKEAGKTRDRKAKSLENLIDPGSKRTKKEGAKRWPGLGFRI 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00240 578 PANTHER - 22 577 - -
Gma08g00240 578 MobiDBLite consensus disorder prediction 543 572 - -
Gma08g00240 578 ProSiteProfiles TPR repeat profile. 276 309 IPR019734 GO:0005515
Gma08g00240 578 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 22 577 - -
Gma08g00240 578 SMART tpr_5 318 351 IPR019734 GO:0005515
Gma08g00240 578 SMART tpr_5 444 477 IPR019734 GO:0005515
Gma08g00240 578 SMART tpr_5 236 269 IPR019734 GO:0005515
Gma08g00240 578 SMART tpr_5 486 519 IPR019734 GO:0005515
Gma08g00240 578 SMART tpr_5 194 227 IPR019734 GO:0005515
Gma08g00240 578 SMART tpr_5 361 394 IPR019734 GO:0005515
Gma08g00240 578 SMART tpr_5 152 185 IPR019734 GO:0005515
Gma08g00240 578 SMART tpr_5 109 142 IPR019734 GO:0005515
Gma08g00240 578 SMART tpr_5 402 435 IPR019734 GO:0005515
Gma08g00240 578 SMART tpr_5 276 309 IPR019734 GO:0005515
Gma08g00240 578 Gene3D Tetratricopeptide repeat domain 67 263 IPR011990 GO:0005515
Gma08g00240 578 Pfam Tetratricopeptide repeat 446 518 - -
Gma08g00240 578 Pfam Tetratricopeptide repeat 275 349 - -
Gma08g00240 578 Pfam MalT-like TPR region 113 262 IPR041617 -
Gma08g00240 578 MobiDBLite consensus disorder prediction 543 578 - -
Gma08g00240 578 MobiDBLite consensus disorder prediction 1 58 - -
Gma08g00240 578 Gene3D Tetratricopeptide repeat domain 264 444 IPR011990 GO:0005515
Gma08g00240 578 Gene3D Tetratricopeptide repeat domain 445 569 IPR011990 GO:0005515
Gma08g00240 578 SUPERFAMILY TPR-like 403 544 IPR011990 GO:0005515
Gma08g00240 578 SUPERFAMILY TPR-like 151 349 IPR011990 GO:0005515
Gma08g00240 578 Coils Coil 527 547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00240 Gma-Chr8 2040794 2044608 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00240 109 321 Glycosyltransferase AT3G04240 25.000 4.70e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00240 - - gmx:100815100 1091.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g00240 08 2040794 2044608 Gma08g00240 08 2040794 2044608 ECH
Gma05g02133 05 42496870 42500256 Gma08g00240 08 2040794 2044608 GST