Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g02133 ATGCCGGGTCTGGTCTCCGTAGCGGACACCCCCCAAAGATCCCCTTCCCCAGTTCCCAAGAAAGCAGCCTCCCCATCCCCTTCTGGCTCCTCCAAAAAGAAAGCCCCACTTCTCTCCGATGCCTCTCTGGACAACCCTGATCTCGGCCCATTCCTTCTCAAGCTGGCCCGCGACACCATTGCCTCTGGCGATGGCCCCGCCAAGGCCCTCGACTTCGCCATCCGGGCCTCCACTTCCTTTGAGCGCTGCGCCATCCAGGGCGAGCCCAGCCTCGACCTCGCCATGAGCCTCCACGTCCTCGCCGCCATCTACTGCAGCCTCGGACGCTTCGAAGAAGCCGTCCCCGTCCTCGAACGCGCCATCCTGGTCCCCGACGTCGACCGCGGCCCCGATCACGCCCTCGCCTCGTTCTCCGGCTACATGCAGCTCGGCGACACCTTCTCCATGCTCGGTCAGGTTGACCGATCCATCTCCTGCTACGACCAAGGCCTCCAGATCCAGATCCAAGCCCTCGGTGACACCGATCCCCGCGTCGGTGAAACTTGCCGATACTTGGCGGAGGCAAATGTGCAAGCAATGCAGTTTGATAAAGCAGAGGAGCTGTGTAAGAAGACACTGGAGATTCATCGGGCACATAGTGAACCGGCTTCGCTTGAGGAAGCTGCAGATAGGAGGCTCATGGCGCTGATTTGCGAGGCGAAGGGAGATTACGAATCAGCGTTGGAGCATCTTGTGCTTGCTAGCATGGCTATGATTGCAAATGGTCAAGATAATGAGGTTGCGTCAATTGATGTTAGCATTGGGAACATTTACATGTCACTTTGTCGATTTGATGAGGCGATTTTCTCTTACCAGAAGGCACTAACTGTGTTTAAGTCTGCCAAGGGTGAGAACCACCCTTCTGTTGCATCTGTTTTTGTGCGGCTGGCTGATTTGTACCACAGGACTGGGAAGCTTCGTGAGTCAAAGTCTTACTGCGAGAATGCTCTTAGGATTTACTCAAAGCCTGTTCCGGGGACCACTGCGGAGGAGATTGCCGGTGGATTGACGGAGATTTCAGCAGTTTTTGAATCTGTGGATGAGCCGGAGGAGGCACTGAAGCTGTTGAACAGGGCGATGAAGTTGTTGGAGGATAAGCCAGGGCAGCAGAGCACGATTGCAGGGATTGAGGCACGAATGGGAGTGATGTATTACATGATTGGGAGGTATGAGGACTCAAGGAACTCGTTTGAGAGTGCTGTGGCGAAACTCAGGGCTAGTGGGGAGAGGAAGAGTGCCTTCTTTGGAGTTGTTTTGAACCAGATGGGATTGGCGTGTGTTCAACTGTTCAAGATTGACGAGGCTGCTGAGTTGTTTGAAGAAGCTAGGGGAATTCTTGAACAGGAGTGTGGCCCTTGTCATCAGGATACTCTTGGGGTGTACAGCAATCTTGCAGCTACATATGATGCTATGGGAAGAGTGGGAGATGCGATTGAAATCTTAGAATATGTGCTCAAGTTGAGGGAGGAAAAGCTTGGAATAGCAAATCCTGATTTTGAAGATGAGAAGCGTCGTCTGGCCGAGCTTCTGAAAGAAGCAGGCAAGACACGGGACAGAAAAGCAAAATCTCTGGAAAACCTTATTGATCCTGGCTCAAAGAGGACAAAGAAGGAGGGGGCAAAGAGGTGGCCTGGTTTGGGGTTTAGAATTTAA 1692 0.5325 MPGLVSVADTPQRSPSPVPKKAASPSPSGSSKKKAPLLSDASLDNPDLGPFLLKLARDTIASGDGPAKALDFAIRASTSFERCAIQGEPSLDLAMSLHVLAAIYCSLGRFEEAVPVLERAILVPDVDRGPDHALASFSGYMQLGDTFSMLGQVDRSISCYDQGLQIQIQALGDTDPRVGETCRYLAEANVQAMQFDKAEELCKKTLEIHRAHSEPASLEEAADRRLMALICEAKGDYESALEHLVLASMAMIANGQDNEVASIDVSIGNIYMSLCRFDEAIFSYQKALTVFKSAKGENHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYSKPVPGTTAEEIAGGLTEISAVFESVDEPEEALKLLNRAMKLLEDKPGQQSTIAGIEARMGVMYYMIGRYEDSRNSFESAVAKLRASGERKSAFFGVVLNQMGLACVQLFKIDEAAELFEEARGILEQECGPCHQDTLGVYSNLAATYDAMGRVGDAIEILEYVLKLREEKLGIANPDFEDEKRRLAELLKEAGKTRDRKAKSLENLIDPGSKRTKKEGAKRWPGLGFRI 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g02133 563 Pfam MalT-like TPR region 98 248 IPR041617 -
Gma05g02133 563 PANTHER - 9 562 - -
Gma05g02133 563 SUPERFAMILY TPR-like 137 334 IPR011990 GO:0005515
Gma05g02133 563 Coils Coil 512 532 - -
Gma05g02133 563 Gene3D Tetratricopeptide repeat domain 430 540 IPR011990 GO:0005515
Gma05g02133 563 MobiDBLite consensus disorder prediction 1 42 - -
Gma05g02133 563 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 9 562 - -
Gma05g02133 563 SUPERFAMILY TPR-like 388 529 IPR011990 GO:0005515
Gma05g02133 563 MobiDBLite consensus disorder prediction 528 563 - -
Gma05g02133 563 Pfam Tetratricopeptide repeat 260 334 - -
Gma05g02133 563 Pfam Tetratricopeptide repeat 431 503 - -
Gma05g02133 563 ProSiteProfiles TPR repeat profile. 261 294 IPR019734 GO:0005515
Gma05g02133 563 Gene3D Tetratricopeptide repeat domain 248 429 IPR011990 GO:0005515
Gma05g02133 563 MobiDBLite consensus disorder prediction 9 35 - -
Gma05g02133 563 Gene3D Tetratricopeptide repeat domain 34 247 IPR011990 GO:0005515
Gma05g02133 563 SMART tpr_5 94 127 IPR019734 GO:0005515
Gma05g02133 563 SMART tpr_5 221 254 IPR019734 GO:0005515
Gma05g02133 563 SMART tpr_5 137 170 IPR019734 GO:0005515
Gma05g02133 563 SMART tpr_5 179 212 IPR019734 GO:0005515
Gma05g02133 563 SMART tpr_5 387 420 IPR019734 GO:0005515
Gma05g02133 563 SMART tpr_5 429 462 IPR019734 GO:0005515
Gma05g02133 563 SMART tpr_5 346 379 IPR019734 GO:0005515
Gma05g02133 563 SMART tpr_5 261 294 IPR019734 GO:0005515
Gma05g02133 563 SMART tpr_5 303 336 IPR019734 GO:0005515
Gma05g02133 563 SMART tpr_5 471 504 IPR019734 GO:0005515
Gma05g02133 563 MobiDBLite consensus disorder prediction 528 557 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g02133 Gma-Chr5 42496870 42500256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g02133 84 306 Glycosyltransferase AT3G04240 25.217 1.14e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g02133 - - gmx:100807384 1068.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g02133 05 42496870 42500256 Gma05g02133 05 42496870 42500256 ECH
Gma05g02133 05 42496870 42500256 Gma08g00240 08 2040794 2044608 GST