Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00175 ATGAAGTGCAGATCGGTGGCGTGCATATGGTCCGACACGCCCTTCCCTCACCGCGTCACCGCCGTCGCCGCTTTACCCGAACCTCCGACTCCGACCTTTTACACCGCCGGATCCAATGGCTCCGTCATCTGGTGGACCCTCTCCACTTCCCCACCGCAACTTAGGGCGGTGGGCGTGTTGTGCGGTCACGCCGCACCGATCACCGATCTCGCCGTTTGCAGTCCCGTCGCAGATGCAGAACACGTTTACGGTCCAAGTGGAAGAAGTAAGTTCAGTGCGTTGATTAGTGCGTGTTGCGATGGTTTTTTGTGTGTTTGGAGCAAAAACAGTGGTCATTGCCGGTGCAGGAGGAAATTGCCACCTTGGGTTGGCACTCCCCGCATAATTCGAACTTTGCCTTCAACGCCGAGATATGTCTGTATAGCGTGTTCTTTTGAAGGAAATGAAGGAGTAATTGATAGAGAAACTCAGCCTAGGAAGCCTCCTAAATGCACTATTCTTATTGTCGACTCGTATTCGCTTTCCATTACCCAGACTGTGTTTCATGGAAGTCTATCCATTGGTCCAATTAGTTTTATGGCACTAGTTTTAGGTGATGACGAGAAGAGGAATTCGGTTTTTGTGGCTGATTCTGCTGGGAGGCAGCAGACGGTTTTGATATCGGAGGATCGAGGGGAAAGCTTGGTGAGTTCGCTCGGAGATAAAGGTCAATCGGAGAGTTCTTTTTGCTATGAGGGATTGAGTGGTGTGGAGCAAATTGTTTCAGTTTTAACGTATGGGAATGCTGTTGCTTTTATATTGAAAGATAGGTGTGTGTTTAGGTTGTTAAATGGTGATAGTGTGATTGGAGAGGTTTCTTTTGTGGACAGTCTATTTGGTTTGGATCGGGGTTCTACTCAAATGTATGCTATTGGTGGAATTTTTCTTGAAAGTGATGATGTGGGGAATATGTGCAATGCCAACGAATATGGAAACTCGATTACAGTACAATTTGTTGTGTGGAATAATGTAGGTCATGCAGTTATATACAATGTGTTGTATCAGAATGATGTTTTTAAATGTGAACCTCATTCTGAGATTCCTGGTACTCATTATCAACCTGATATGAGATTATCTGTTTTCTTCCTACAAGTAAATCAACATCTTGTTTGTGTCAAGTCAGTTTGCCTTAATCATGAGGAGCCTTTACTATGGAGACCACTTGCCACAATCTGGTCGACGCATGATTGTGATGATGAACCTGGTAGATTGTACCGTCAATGCAGAATGATCAGTGATGGTGTATCTTTCATCAACTGGTTTGAGAAATCGACTCAGCTCCAGGGACTGGATGGGCTAGAGACTACGCCTACTTTTGGTGTGAGTCCAAGTTCGGATGATGTAGACAACACACATGTGGATAGCATGAGTAATTATTATGCTTACAAGGGGAAGGTAGTTTCTTCTTCCATGATTATCTCTGAGAACCTCTTTACTCCTTATGCTGTTGTATATGGTTTTTTAAGTGGAGAAATAGAGGTTGTAAGATTTGATCTGTTTCACGGGATTTGCTTGGACGATGCAAGTTCCAATCCTGATGAAAAGTCTACTGCATGCAAACAGTGCTTCTCAGGACATACAGGTGCTGTACTTTGTTTGGCAGCACATCAAATGATGGGTAGGGCCAAAAGCTGGAATTTCAAACAGGTTTTGGTGTCTGGAAGTATGGATTGCACGATTCGTATATGGGATCTTGACACTGGCAGTCTTATTATGGTAATGCATCATCATGTGGCTCCCGTGCGTCAAATTATTCTTCCCCCTTCTTTGACTGTGTATCCTTGGAGTGATTGCTTCCTTTCAGTTGGAGAGGATGCATGTGTTGCTCTTGTTTCTCTTGAGACTCTGCGAGTGGAGAGAATGTTTCCTGGACACATGAACTATCCTTCTAAAGTTTTATGGGATGGAGCAAGAGGTTATATTTCCTGTCTCTGTCAAACACATTATGGAACTTCTGATGCTACTGATTTATTATACATTTGGGATGTAAAGACAGGTTCACGCGAGCGAGTCCTACGTGGGACAGCTGCACATTCAATGTTTGATCATTTTTGTAAAAGCATCAGCATGAATTCCATATCTGGCACATTGCTGAATGGAAATACATCAGTCTCTTCATTACTTCTTCCAATAGTTGATGATGCAAAATTCTCTAACTCCCCATTAAATCGGTCAGACAACTTGCTTACTTCATCAAGGTCGTCACCAAGTATTTCAAATATGACTGAGCTGAATTCTTCCAAAACAAATGCAGGTAAAGGAAATTCAGTGATGCAGAATTCATCCTCTCTGATTGGTCTTTTGAGTAGCAAGCTTCCTATCAAATGCTCTAGCCCATTCCCAGGGATTGTGTCTCTGTGTTTTGATCTTGCATCATTGATGCTTTCTTATCCAAAGAATGAGTCCATGGAAAATGGTGGTGGCAAGCCAGTGAATATCAATATGAAGCAGCAGGGAGTTCAGGAGCAAAATCCCAGCTACCATAATCCAGAAACTGTAGAGGGGCATGACTTGGTTAGCCTATTTGAAGAATACTTACTTCGATTTAGCTTGTCATTTCTACATTTGTGGAGTGTAGACAGAGAGCTTGATAATTTGCTGATAAGTGAAATGAAGCTGAGGAGACCAGAAAATTTTATAGTAGCTTCTGGTCTGCAGGGGGATAAAGGGTCGTTGACATTGACGTTTCCTGCTCAGAGTGCTACTCTAGAGCTCTGGAAATCATCATCTGAGTTTTGTGCAATGAGGTCATTGACGATGGTGTCCCTTGCCCAACGTTTGATTAGCTTGTCTCACTCTGGTTCAGCAGCCAGCAGTGCTTTAGCAGCCTTTTATACTCGGAATTTCCTGGAAAATTTTCCAGATGTGAAGCCACCTTCATTACAGCTCTTGGTGGCTTTTTGGCAAGATGAAAGTGAACATGTGCGTATGGCTGCGCGCTCTATATTTCATTGTGCTGCCTCTCATGCTATTCCTCTACCTCTATGCTATTCAAAACCTACAGATTCAAACAACATGGGTTCCCAAACTGGAAGTAGAGACAAACATCTAGGAAATATGGCAGAAGAAAGTATATCTCCTAAGGCAGAAAATCAAGGAATTTCCCAAGATGAGGAATCCAAGATACTTGCTTGGTTAGAATCATTTGAAGTGCAAGATTGGATTTCTTGTGTTGGAGGAACAAGTCAGGATGCAATGACATCTCACATTATTGTTGCTGGTGCACTGGCTATCTGGTATCCTAGTCTTGTAAAACCAAGTCTTGGCATGCTAGTTGTTCATCCGTTAATGAAGTTGGCTATGGCCATGAATGAGAAATACAGCTCCACTGCTGCTGAGCTCCTTGCAGAGGGCATGGAAAGTACATGGAAAGAATGCATTGTCTCTGAGATTCCTCGTCTGATTGGGGATATTTTTTTCCAAGTAGAGTTGAGTGGTCCATCTTCCAAGTTAGTGAAAGAAATTTCAGATGCATCTTTTTCTATTAAAAAGACTTTGGTGGAGGTTCTTCTTCCAAGTTTAGCTATGGCTGATATACCAGGCTTTTTGACTGTGATTGAAAGCCAAATTTGGTCCACTGCATCTGATTCACCTGTTCACATGGTGTCCTTGTTGACTCTTATAAGGATCATGCGTGGTTCTCCAAAGAATTCGGCTCAATACCTTGACAAGGTGGTCAACTTCATTTTACAGACTATAGATCCAAGCAACTCAGTCATGCGGAAGGCATGCTTTCAGAGTTCAATGACAACTTTAAAGGAAGTTGTACGTGTATATCCCATGGTGGCTGTCACTGATTCATGGACCAAACTAGCAGTTGGAGATGTGATTGGAGAAATTAACAACGCAAGAATTAGGGTTTATGATATGCAAAGTGTGACAATGGTAAAGGTTTTGGATGCAAGTGGGCCTCCTGGACTTCCAACTCTGCTCCCAGCAGCAACTTCAGGAACAATGTTGACTACTGCAATTTCAGCACTGAGCTTTTCACCAGATGGAGAGGGGCTGGTCGCTTTTTCTGAAAATGGGCTACTGATTAGATGGTGGTCACTGGGATCTTTCTGGTGGGAGAAACTAAGCCGGAACTTTGTTCCTGTCCAGTGCACCAAACTAATCTTTGTTCCTCCTTGGGAAGGATTTTCACCTAATTCATCCAGGTCAAGCATAATGGCCAATATTTTGGAAACTGACAGGCAGATGAACTTTCAGGATAATTCAAGGGATTCAAATCACGGGGACAGCCCGAAACACTTGCTTCATACTTTGGACCTCTCCTATAGACTAGAATGGGTCGAGGGGCGGAAAGTACTTCTTACAAGACATGGTCATGAATTGGGCACTTTTCAGTTATAA 4392 0.4312 MKCRSVACIWSDTPFPHRVTAVAALPEPPTPTFYTAGSNGSVIWWTLSTSPPQLRAVGVLCGHAAPITDLAVCSPVADAEHVYGPSGRSKFSALISACCDGFLCVWSKNSGHCRCRRKLPPWVGTPRIIRTLPSTPRYVCIACSFEGNEGVIDRETQPRKPPKCTILIVDSYSLSITQTVFHGSLSIGPISFMALVLGDDEKRNSVFVADSAGRQQTVLISEDRGESLVSSLGDKGQSESSFCYEGLSGVEQIVSVLTYGNAVAFILKDRCVFRLLNGDSVIGEVSFVDSLFGLDRGSTQMYAIGGIFLESDDVGNMCNANEYGNSITVQFVVWNNVGHAVIYNVLYQNDVFKCEPHSEIPGTHYQPDMRLSVFFLQVNQHLVCVKSVCLNHEEPLLWRPLATIWSTHDCDDEPGRLYRQCRMISDGVSFINWFEKSTQLQGLDGLETTPTFGVSPSSDDVDNTHVDSMSNYYAYKGKVVSSSMIISENLFTPYAVVYGFLSGEIEVVRFDLFHGICLDDASSNPDEKSTACKQCFSGHTGAVLCLAAHQMMGRAKSWNFKQVLVSGSMDCTIRIWDLDTGSLIMVMHHHVAPVRQIILPPSLTVYPWSDCFLSVGEDACVALVSLETLRVERMFPGHMNYPSKVLWDGARGYISCLCQTHYGTSDATDLLYIWDVKTGSRERVLRGTAAHSMFDHFCKSISMNSISGTLLNGNTSVSSLLLPIVDDAKFSNSPLNRSDNLLTSSRSSPSISNMTELNSSKTNAGKGNSVMQNSSSLIGLLSSKLPIKCSSPFPGIVSLCFDLASLMLSYPKNESMENGGGKPVNINMKQQGVQEQNPSYHNPETVEGHDLVSLFEEYLLRFSLSFLHLWSVDRELDNLLISEMKLRRPENFIVASGLQGDKGSLTLTFPAQSATLELWKSSSEFCAMRSLTMVSLAQRLISLSHSGSAASSALAAFYTRNFLENFPDVKPPSLQLLVAFWQDESEHVRMAARSIFHCAASHAIPLPLCYSKPTDSNNMGSQTGSRDKHLGNMAEESISPKAENQGISQDEESKILAWLESFEVQDWISCVGGTSQDAMTSHIIVAGALAIWYPSLVKPSLGMLVVHPLMKLAMAMNEKYSSTAAELLAEGMESTWKECIVSEIPRLIGDIFFQVELSGPSSKLVKEISDASFSIKKTLVEVLLPSLAMADIPGFLTVIESQIWSTASDSPVHMVSLLTLIRIMRGSPKNSAQYLDKVVNFILQTIDPSNSVMRKACFQSSMTTLKEVVRVYPMVAVTDSWTKLAVGDVIGEINNARIRVYDMQSVTMVKVLDASGPPGLPTLLPAATSGTMLTTAISALSFSPDGEGLVAFSENGLLIRWWSLGSFWWEKLSRNFVPVQCTKLIFVPPWEGFSPNSSRSSIMANILETDRQMNFQDNSRDSNHGDSPKHLLHTLDLSYRLEWVEGRKVLLTRHGHELGTFQL 1463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00175 1463 Gene3D - 3 219 IPR015943 GO:0005515
Gma08g00175 1463 SMART WD40_4 53 107 IPR001680 GO:0005515
Gma08g00175 1463 SMART WD40_4 5 46 IPR001680 GO:0005515
Gma08g00175 1463 SMART WD40_4 1329 1363 IPR001680 GO:0005515
Gma08g00175 1463 SMART WD40_4 529 577 IPR001680 GO:0005515
Gma08g00175 1463 ProSitePatterns Trp-Asp (WD) repeats signature. 564 578 IPR019775 -
Gma08g00175 1463 SUPERFAMILY ARM repeat 775 1259 IPR016024 -
Gma08g00175 1463 Pfam WD domain, G-beta repeat 532 577 IPR001680 GO:0005515
Gma08g00175 1463 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 537 588 - -
Gma08g00175 1463 SUPERFAMILY WD40 repeat-like 17 687 IPR036322 GO:0005515
Gma08g00175 1463 ProSiteProfiles Trp-Asp (WD) repeats profile. 564 586 IPR001680 GO:0005515
Gma08g00175 1463 MobiDBLite consensus disorder prediction 738 768 - -
Gma08g00175 1463 PANTHER RABCONNECTIN-3B, ISOFORM A 1 1463 - -
Gma08g00175 1463 Gene3D - 491 788 IPR015943 GO:0005515
Gma08g00175 1463 PANTHER RABCONNECTIN-3B, ISOFORM A 1 1463 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00175 Gma-Chr8 1515396 1525484 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00175 K24738 - gmx:100818675 2907.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g00175 08 1515396 1525484 Gma08g00175 08 1515396 1525484 ECH
Gma05g02072 05 41974489 41983735 Gma08g00175 08 1515396 1525484 GST