Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00166 ATGGATGTGTTGTTGTTGTTATTATTATGTGTTCTCTTGGTTGGTTTGCCAAACCTGGCTATAGTAGAGAGTCGCAGGGCTCCCGTTCTGGACTACTTTGAGTATTGTGCTATGAGCTGCAGAGCTTACAGTGCCTCGTTGGAAGAATTTGGAGGGGTTGGTGATGGAACAACTTTGAACACTAAAGCCTTTCAGGCTGCCATAGAGAATCTGAGTCAGTATGCAGCAAGTGGTGGTTCTCAACTTTATGTTCCCCCAGGAAAATGGTTAACTGGCAGCTTCAATCTCACCAGCCATTTCACTTTATTCCTACACAAGGATGCTGTAATTCTTGCCTCTCAGGATGAGAATGACTGGCCAGTGATTGATCCCTTGCCATCTTATGGTAGAGGGAGGGACACACAAGGTGGAAGGTTTAGCAGCCTGATTTTTGGAACCAACCTCACTGATGTAATCATAACTGGGGACAATGGCACAATAGATGGACAAGGTGATCTGTGGTGGCAAAAATTCCACAAGGGTGAGCTCAAGTACACCCGTCCTTACCTGGTTGAAATTATGTACTCAGATAATGTTCAGATATCCAATCTCACTTTGGTTAATTCTCCATCATGGAATGTCCATCCTATATACAGCAGCAACGTTGTTGTTCAAGGAATCACAATTCTTGCTCCTGTGACATCCCCAAATACAGATGGAATCAACCCGGATTCTTGCACAGACACACGAATTGAGGACTGTTACATTGTATCCGGGGATGACTGTGTTGCTGTGAAGAGTGGTTGGGATGAGTATGGTATAGCTTATGGAATGCCAACAAAGCAGCTTGTAATCAGAAGACTCACTTGTATTTCTCCATTCAGTGCTGCGATTGCTTTAGGGAGTGAAATGTCTGGTGGGATTCAGGATATGAGGGCTGAGGACATTGTAGCCATCAATACAGAATCAGGGGTCAGGATCAAAACTGCTGTAGGAAGAGGAGGCTATGTCAAGGACATATTTGTTAGAAGAATGACCATGAAAACCATGAAATGGGCATTTTGGATGACAGGAAATTACGGGTCTCATGCTGATGACAACTATGATCCTAATGCACTTCCTGTGATTCAGAACATTAATTATCGCGATATGGTTGCTGAGAATGTCACTATGGCTGCAAGGTTGGAGGGTATATCTGGGGACCCCTTCACAGGTATATGCATATCCAATGTAACCATTCAACTGGCAAAGAAGGCTAAAAAAGTTCCATGGACTTGCACTGATATTGCTGGGATTTCAAGTGATGTGACTCCTGCGCCTTGTGATCTGTTGCCTGACCAAGGAGAAGAGAAGATTGGGGCATGCACCTTCCCAGAAGAAAGTTTGCCCATCGAAGATATCAAGGTTCAAACGTGCACTTACAGAAGGAACTTATGA 1416 0.4414 MDVLLLLLLCVLLVGLPNLAIVESRRAPVLDYFEYCAMSCRAYSASLEEFGGVGDGTTLNTKAFQAAIENLSQYAASGGSQLYVPPGKWLTGSFNLTSHFTLFLHKDAVILASQDENDWPVIDPLPSYGRGRDTQGGRFSSLIFGTNLTDVIITGDNGTIDGQGDLWWQKFHKGELKYTRPYLVEIMYSDNVQISNLTLVNSPSWNVHPIYSSNVVVQGITILAPVTSPNTDGINPDSCTDTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPFSAAIALGSEMSGGIQDMRAEDIVAINTESGVRIKTAVGRGGYVKDIFVRRMTMKTMKWAFWMTGNYGSHADDNYDPNALPVIQNINYRDMVAENVTMAARLEGISGDPFTGICISNVTIQLAKKAKKVPWTCTDIAGISSDVTPAPCDLLPDQGEEKIGACTFPEESLPIEDIKVQTCTYRRNL 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00166 471 Pfam Glycosyl hydrolases family 28 135 414 IPR000743 GO:0004650|GO:0005975
Gma08g00166 471 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 7 468 - -
Gma08g00166 471 PANTHER PECTIN LYASE-RELATED 7 468 - -
Gma08g00166 471 SUPERFAMILY Pectin lyase-like 37 438 IPR011050 -
Gma08g00166 471 Gene3D - 36 428 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00166 Gma-Chr8 1434085 1436104 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00166 33 469 Glycoside Hydrolase AT4G23500 74.600 0.0 706
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00166 - - gmx:100803375 952.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g00166 08 1434085 1436104 Gma08g00166 08 1434085 1436104 ECH
Gma05g02063 05 41886176 41888422 Gma08g00166 08 1434085 1436104 GST