Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g02063 ATGGATATGTTGTTGTTATTATGTGTTCTCTTGGTTGCATTGCCAAACCTGGCTGTAGTAGAGAGTCGCAGGGCTCCTGTTCTGGACTACTTTGAGTATTGTGCTATGAGCTGCAGAGCTTACAGTGCCTCATTGGAAGAATTTGGAGGGGTTGGTGACGGAACAACTTTGAACACAAAAGCTTTTCAGGCAGCCATAGATCATCTGAGTCAGTATGCATCAAGTGGTGGTTCTCAACTTTATGTTCCCCCAGGAAAATGGTTAACTGGCAGTTTCAATCTCACCAGCCATTTCACTTTATTCCTACACAAGGATGCTGTGATTCTTGCCTCTCAGGATGAGAATGACTGGCCGGTGATTGGTCCCTTGCCATCTTATGGTAGAGGGAGGGACACACAAGGTGGAAGGTTTAGCAGCCTAATTTTTGGAACCAACCTCACTGATGTAATCATAACTGGGGACAATGGCACAATAGATGGACAAGGTGATCTGTGGTGGCAAAAATTCCGCAAGGGGGAGCTCAAGTATACCCGGCCTTACCTGATTGAAATCATGTACTCAGATAATGTTCAAATATCCAATCTCACTTTGGTTAATTCTCCATCGTGGAATGTACATCCTATATACAGCAGCAACCTTGTTGTTCAAGGAATCACAATTCTTGCTCCTGTGACATCCCCAAATACAGATGGAATCAACCCTGACTCTTGCACAAACACGCGAATTGAGGACTGTTACATTGTCTCTGGGGATGACTGTGTGGCTGTGAAGAGCGGTTGGGATGAGTATGGTATAGCTTATGGAATGCCAACAAAGCAGCTTGTAATTAGAAGACTCACTTGTATTTCTCCATTCAGTGCTGTGATTGCTTTAGGGAGTGAGATGTCTGGTGGGATTCAGGACGTCAGAGCTGAGGACATTGTAGCCATCAATTCAGAATCAGGGGTCAGAATCAAAACTGCTGTAGGAAGAGGGGGTTATGTCAAGGACATATTTGTTAGAAGAATGACCATGAAAACCATGAAATGGGCATTTTGGATGACAGGAAATTATGGGTCTCATGCTGATGACAACTATGATCCTAATGCACTTCCTGTGATTCAGAACATTAATTATCGTGATATGGTTGCTGAGAATGTCACTATGGCAGCAAGGTTGGAGGGTATATCTGGTGACCCTTTCACTGGAATCTGCATATCCAATGTAACCATTCAACTGGCAAAGAAGGCTAAGAAAGTTCCATGGACTTGCACTGATATTGCTGGAATTTCAAGTGATGTGACTCCTGCTCCTTGTGGTCTGTTGCCAGACCAGGGAGAAGAGAAGATTGGGGCATGTACCTTCCCAGAAGAAAGTTTGCCCATCGAAGATATCAAGGTTCAAACGTGCACTTACAGAAGGAATTTATGA 1410 0.4397 MDMLLLLCVLLVALPNLAVVESRRAPVLDYFEYCAMSCRAYSASLEEFGGVGDGTTLNTKAFQAAIDHLSQYASSGGSQLYVPPGKWLTGSFNLTSHFTLFLHKDAVILASQDENDWPVIGPLPSYGRGRDTQGGRFSSLIFGTNLTDVIITGDNGTIDGQGDLWWQKFRKGELKYTRPYLIEIMYSDNVQISNLTLVNSPSWNVHPIYSSNLVVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPFSAVIALGSEMSGGIQDVRAEDIVAINSESGVRIKTAVGRGGYVKDIFVRRMTMKTMKWAFWMTGNYGSHADDNYDPNALPVIQNINYRDMVAENVTMAARLEGISGDPFTGICISNVTIQLAKKAKKVPWTCTDIAGISSDVTPAPCGLLPDQGEEKIGACTFPEESLPIEDIKVQTCTYRRNL 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g02063 469 PANTHER PECTIN LYASE-RELATED 5 466 - -
Gma05g02063 469 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 5 466 - -
Gma05g02063 469 SUPERFAMILY Pectin lyase-like 35 436 IPR011050 -
Gma05g02063 469 Pfam Glycosyl hydrolases family 28 133 412 IPR000743 GO:0004650|GO:0005975
Gma05g02063 469 Pfam Pectate lyase superfamily protein 46 100 IPR024535 -
Gma05g02063 469 Gene3D - 34 426 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g02063 Gma-Chr5 41886176 41888422 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g02063 31 467 Glycoside Hydrolase AT4G23500 75.744 0.0 712
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g02063 - - gmx:100785841 941.414
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g02063 05 41886176 41888422 Gma05g02063 05 41886176 41888422 ECH
Gma05g02063 05 41886176 41888422 Gma08g00166 08 1434085 1436104 GST