Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00063 ATGGAGCACGTGGGGTTTTCGAAAGCGGCGATAGCCGATCATGGCCGCGGCAAGAAAACGGGTCCGGTTTCGATGGATCACGTGCTTCTTGCTCTGCGCGAGACCAAGGATGAGAGGGATCTTCGAATTCGGAGTCTCTTCAATTTCTTCGATGCTGCGAATAATGGGTACTTGGACTATGCTCACATTGAGGCCGGTTTGTCTGCACTGCAGATTCCCCCTGAGTATAAGTATGCAAAGGAGCTTTTCAAGGTGTGTGATGCTGATAGGGATGGAAGGATCGATTACCGCGACTTTAGGCGTTACATGGATGACAAGGAGTTGGAGCTTTACCGCATATTTCAGGCTATTGATGTGGAGCACAATGGCTGCATTCTCCCTGAAGAGCTTTGGGATGCTCTTGTCAAGGCTGGGATTGAAATTGACGAGGAAGAGCTTGCTCGCTTTGTGGAGCATGTTGACAAGGATAATAATGGAATTATCACTTTTGAAGAGTGGAGAGATTTTCTTCTACTTTATCCTCATGAAGCGACTATTGAAAACATATATCATCATTGGGAGAGGGTGTGCCTTGTTGACATTGGAGAACAAGCTGTTATTCCCGAAGGCATCAGCAAGCATGTGCACAGGAGCAGATATTTTATTGCAGGGGGGATAGCAGGAGCTGCTTCTCGTACAGCAACTGCTCCTCTTGATCGTCTAAAGGTGCTCTTACAAGTTCAGACTGGACGAGCTTCTATTATGCCGGCAGTGATGAAGATATGGCGACAAGATGGTTTATTAGGGTTTTTCCGAGGTAATGGATTGAATGTTGTGAAGGTAGCTCCAGAGAGTGCCATCAAGTTTTATGCTTATGAAATGCTGAAAAATGTAATTGGAGATGCTCAAGATGGCAAGTCAGATATTGGTACTGCAGGAAGACTTTTTGCAGGTGGTATGGCTGGTGCAGTTGCACAGATGGCTATCTATCCAATGGATCTTGTCAAAACTAGGTTACAGACTTGTGCTTCTGATGGTGGAAGGGTTCCTAAGCTTGGCACACTTACAAAGGATATATGGGTCCATGAGGGACCTCGGGCTTTCTACAGAGGGCTTGTTCCATCTCTTCTTGGTATGATTCCTTATGCAGGGATTGATCTCACTGCATATGACACCTTGAAAGATCTATCCAAGAGATATATTCTTTATGACAGTGATCCTGGTCCTCTAGTACAACTCGGATGTGGGACTGTTTCAGGTGCTCTTGGAGCTACATGTGTCTATCCGCTGCAGGTTATTCGTACAAGACTGCAGGCACAACCTGCCAACAGTACTAGTGCTTACAAGGGAATGTCTGATGTTTTCTGGAAAACTCTTAAGGATGAAGGTTTTAGAGGTTTCTACAAGGGACTCATTCCTAATCTCCTCAAAGTTGTGCCAGCTGCAAGCATTACTTATATGGTTTATGAAAGTATGAAGAAGAGTCTAGATCTTGAATAG 1479 0.451 MEHVGFSKAAIADHGRGKKTGPVSMDHVLLALRETKDERDLRIRSLFNFFDAANNGYLDYAHIEAGLSALQIPPEYKYAKELFKVCDADRDGRIDYRDFRRYMDDKELELYRIFQAIDVEHNGCILPEELWDALVKAGIEIDEEELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYHHWERVCLVDIGEQAVIPEGISKHVHRSRYFIAGGIAGAASRTATAPLDRLKVLLQVQTGRASIMPAVMKIWRQDGLLGFFRGNGLNVVKVAPESAIKFYAYEMLKNVIGDAQDGKSDIGTAGRLFAGGMAGAVAQMAIYPMDLVKTRLQTCASDGGRVPKLGTLTKDIWVHEGPRAFYRGLVPSLLGMIPYAGIDLTAYDTLKDLSKRYILYDSDPGPLVQLGCGTVSGALGATCVYPLQVIRTRLQAQPANSTSAYKGMSDVFWKTLKDEGFRGFYKGLIPNLLKVVPAASITYMVYESMKKSLDLE 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00063 492 ProSitePatterns EF-hand calcium-binding domain. 87 99 IPR018247 -
Gma08g00063 492 PRINTS Mitochondrial carrier protein signature 213 226 IPR002067 GO:0055085
Gma08g00063 492 PRINTS Mitochondrial carrier protein signature 226 240 IPR002067 GO:0055085
Gma08g00063 492 PRINTS Mitochondrial carrier protein signature 266 286 IPR002067 GO:0055085
Gma08g00063 492 PRINTS Mitochondrial carrier protein signature 317 335 IPR002067 GO:0055085
Gma08g00063 492 PRINTS Mitochondrial carrier protein signature 362 380 IPR002067 GO:0055085
Gma08g00063 492 PRINTS Mitochondrial carrier protein signature 409 431 IPR002067 GO:0055085
Gma08g00063 492 ProSiteProfiles EF-hand calcium-binding domain profile. 74 109 IPR002048 GO:0005509
Gma08g00063 492 Gene3D - 17 109 - -
Gma08g00063 492 ProSiteProfiles Solute carrier (Solcar) repeat profile. 302 389 IPR018108 -
Gma08g00063 492 Gene3D - 121 196 - -
Gma08g00063 492 ProSiteProfiles EF-hand calcium-binding domain profile. 38 73 IPR002048 GO:0005509
Gma08g00063 492 ProSiteProfiles Solute carrier (Solcar) repeat profile. 400 488 IPR018108 -
Gma08g00063 492 SUPERFAMILY Mitochondrial carrier 207 483 IPR023395 -
Gma08g00063 492 ProSiteProfiles Solute carrier (Solcar) repeat profile. 208 291 IPR018108 -
Gma08g00063 492 PANTHER SOLUTE CARRIER FAMILY 25 53 489 - -
Gma08g00063 492 ProSitePatterns EF-hand calcium-binding domain. 154 166 IPR018247 -
Gma08g00063 492 SUPERFAMILY EF-hand 28 207 IPR011992 -
Gma08g00063 492 ProSiteProfiles EF-hand calcium-binding domain profile. 141 176 IPR002048 GO:0005509
Gma08g00063 492 Pfam EF-hand domain pair 80 105 IPR002048 GO:0005509
Gma08g00063 492 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN 53 489 - -
Gma08g00063 492 SMART efh_1 42 70 IPR002048 GO:0005509
Gma08g00063 492 SMART efh_1 145 173 IPR002048 GO:0005509
Gma08g00063 492 SMART efh_1 78 106 IPR002048 GO:0005509
Gma08g00063 492 SMART efh_1 109 137 IPR002048 GO:0005509
Gma08g00063 492 Pfam Mitochondrial carrier protein 211 293 IPR018108 -
Gma08g00063 492 Pfam Mitochondrial carrier protein 401 489 IPR018108 -
Gma08g00063 492 Pfam Mitochondrial carrier protein 301 390 IPR018108 -
Gma08g00063 492 Pfam EF-hand domain pair 109 168 IPR002048 GO:0005509
Gma08g00063 492 Gene3D Mitochondrial carrier domain 204 490 IPR023395 -
Gma08g00063 492 ProSiteProfiles EF-hand calcium-binding domain profile. 110 140 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00063 Gma-Chr8 539908 543595 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00063 18 492 EF-hand Containing Proteins AT5G51050 78.407 0.0 771
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00063 K14684 - gmx:100790672 980.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g01448 06 13799519 13803517 Gma08g00063 08 539908 543595 ECH
Gma08g00063 08 539908 543595 Gma08g00063 08 539908 543595 ECH
Gma05g01959 05 40939463 40942619 Gma08g00063 08 539908 543595 GST