Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01448 ATGAGCGGGACCGGCGTCGTTTCGATGGATCACGTGCTTGTGGCGCTGGGGGAGACGAAGGAGGAGAGGGAGGTTCGTATTCGGAGCCTGTTCAACTTCTTCGACGCCGCGAACAACGGTTACTTGGACTACGCCCAGATAGAGGCTGGGCTGTCGGCGCTGCAGATTCCGCCGGAGTACAAGTACGCGAGGGAACTCTGCGAGGTTTGCGACGCCAACAGCGACGGCAGAGTCGAGTACCACGAGTTTCGCCGCTACATGGACGACAAGGAGTTGGAGCTTTACCGCATCTTCCAATCCATTGATGTTGAACACGACGGCACCATTCTTCCTGAAGAGCTCTACGAAGCTCTTCTTAAAGCTGGTATTGAAATGAATGATGAGGAGCTTGCTCACTTTGTGGAGCATGTTGATAAGGATAACAATGGAATTATCACTTTTGAAGAATGGAGAGATTTTCTTCTACTTTACCCTCATGAAGCAACTATTGAAAACATATATCATCATTGGGAGAGGGTGTGCCTTGTTGACATTGGAGAGCAAGCTGTCATTCCCGAAGGCATCAGCAAGCACGTGAACCGGAGCAAATATTTTCTTGCTGGTGGAATAGCAGGAGGTATTTCTCGTACAGCAACTGCTCCTCTTGATCGTCTGAAGGTGGTCTTACAAGTTCAAAGCGAACCTGCTTCCATCATGCCAGCAGTAACGAAGATATGGAAGCAAGATGGTCTGTTAGGATTTTTCCGAGGTAATGGATTGAATGTTGTGAAGGTATCACCAGAAAGTGCCATCAAATTTTATGCTTTTGAAATGCTGAAAAAAGTTATTGGAGAGGCCCACAGCAACAAGTCAGATATTGGTACAGCTGGGAGGCTTGTTGCAGGTGGTACGGCTGGTGCAATTGCACAGGCTGCTATCTATCCAATGGATCTCATTAAAACTAGGTTACAGACTTGTCCCTCTGAAGGTGGAAAGGTTCCTAAGCTGGGAACACTTACAATGAATATATGGGTTCAAGAGGGACCTCGAGCTTTCTACAGAGGGCTTGTTCCATCTCTGCTTGGCATGATTCCTTATGCTGCCATTGATCTCACTGCTTATGATACCATGAAAGATATATCCAAGAGATATATTCTTCAGGATAGTGAACCTGGTCCTCTAGTACAACTAGGATGTGGGACAATTTCTGGGGCTGTTGGAGCTACTTGTGTCTATCCATTGCAGGTTATTCGAACAAGACTGCAGGCACAACCTTCCAACACTTCCGATGCTTACAAGGGAATGTTTGATGCCTTTCGGAGAACTTTTCAGCTTGAAGGCTTTATAGGTTTCTACAAGGGACTCTTTCCAAATCTCCTCAAAGTTGTGCCAGCTGCAAGCATTACTTATGTGGTCTATGAAAGTTTGAAGAAGACTCTGGATCTGGATTAG 1431 0.4647 MSGTGVVSMDHVLVALGETKEEREVRIRSLFNFFDAANNGYLDYAQIEAGLSALQIPPEYKYARELCEVCDANSDGRVEYHEFRRYMDDKELELYRIFQSIDVEHDGTILPEELYEALLKAGIEMNDEELAHFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYHHWERVCLVDIGEQAVIPEGISKHVNRSKYFLAGGIAGGISRTATAPLDRLKVVLQVQSEPASIMPAVTKIWKQDGLLGFFRGNGLNVVKVSPESAIKFYAFEMLKKVIGEAHSNKSDIGTAGRLVAGGTAGAIAQAAIYPMDLIKTRLQTCPSEGGKVPKLGTLTMNIWVQEGPRAFYRGLVPSLLGMIPYAAIDLTAYDTMKDISKRYILQDSEPGPLVQLGCGTISGAVGATCVYPLQVIRTRLQAQPSNTSDAYKGMFDAFRRTFQLEGFIGFYKGLFPNLLKVVPAASITYVVYESLKKTLDLD 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01448 476 ProSiteProfiles EF-hand calcium-binding domain profile. 89 124 IPR002048 GO:0005509
Gma06g01448 476 PANTHER MITOCHONDRIAL CARRIER PROTEIN-RELATED 41 474 - -
Gma06g01448 476 ProSitePatterns EF-hand calcium-binding domain. 138 150 IPR018247 -
Gma06g01448 476 SUPERFAMILY Mitochondrial carrier 190 468 IPR023395 -
Gma06g01448 476 Pfam EF-hand domain pair 93 152 IPR002048 GO:0005509
Gma06g01448 476 ProSiteProfiles EF-hand calcium-binding domain profile. 125 160 IPR002048 GO:0005509
Gma06g01448 476 CDD EFh 93 154 IPR002048 GO:0005509
Gma06g01448 476 ProSiteProfiles Solute carrier (Solcar) repeat profile. 192 275 IPR018108 -
Gma06g01448 476 ProSiteProfiles Solute carrier (Solcar) repeat profile. 384 472 IPR018108 -
Gma06g01448 476 Pfam Mitochondrial carrier protein 285 373 IPR018108 -
Gma06g01448 476 Pfam Mitochondrial carrier protein 195 278 IPR018108 -
Gma06g01448 476 Pfam Mitochondrial carrier protein 385 473 IPR018108 -
Gma06g01448 476 Gene3D - 14 171 - -
Gma06g01448 476 ProSiteProfiles Solute carrier (Solcar) repeat profile. 286 373 IPR018108 -
Gma06g01448 476 SUPERFAMILY EF-hand 14 190 IPR011992 -
Gma06g01448 476 Gene3D Mitochondrial carrier domain 188 474 IPR023395 -
Gma06g01448 476 PRINTS Mitochondrial carrier protein signature 210 224 IPR002067 GO:0055085
Gma06g01448 476 PRINTS Mitochondrial carrier protein signature 346 364 IPR002067 GO:0055085
Gma06g01448 476 PRINTS Mitochondrial carrier protein signature 250 270 IPR002067 GO:0055085
Gma06g01448 476 PRINTS Mitochondrial carrier protein signature 197 210 IPR002067 GO:0055085
Gma06g01448 476 PRINTS Mitochondrial carrier protein signature 301 319 IPR002067 GO:0055085
Gma06g01448 476 PRINTS Mitochondrial carrier protein signature 393 415 IPR002067 GO:0055085
Gma06g01448 476 ProSiteProfiles EF-hand calcium-binding domain profile. 22 57 IPR002048 GO:0005509
Gma06g01448 476 PANTHER SOLUTE CARRIER FAMILY 25 41 474 - -
Gma06g01448 476 SMART efh_1 26 54 IPR002048 GO:0005509
Gma06g01448 476 SMART efh_1 93 121 IPR002048 GO:0005509
Gma06g01448 476 SMART efh_1 62 90 IPR002048 GO:0005509
Gma06g01448 476 SMART efh_1 129 157 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01448 Gma-Chr6 13799519 13803517 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g01448 5 476 EF-hand Containing Proteins AT5G51050 73.418 0.0 721
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01448 K14684 - gmx:100795008 935.636
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g01448 06 13799519 13803517 Gma08g00063 08 539908 543595 ECH
Gma06g01448 06 13799519 13803517 Gma06g01448 06 13799519 13803517 ECH