Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma07g01097 ATGTATCAGTGGAGGAAGTTCGAGTTCTTCGAGGAGAAGTACGGCGCGAAGTGCGCGGTTCCTGAGGCCGACGAAGACGACAGCGGCGTCATCGCAGCGGAGAGGAAGATCGAGTGCTGTTCGAGCGGTAGGGGCAAAGTCGTCACCGGCTTCGACGACGGCGTCGTTTGCTTCTTCGATCGAGGCCTCAAGTTTAACTACGCTTTCCAGCCTCACTCCTCTTCCGTTCTCTTTCTTCAGCAACTCAAGCAACGCAACTTTCTGGTAACAATTGGGGAGGATGAACAGCTTACTCCCCAGCAAACAGCTTTGTGCCTCAAGGTTTTTGACCTTGACAAGATGCAATCGGAGAGTTCGAGCACGACAAGTCCTGATTGCGTTGGGATATTGCGAATATTCACTAATCAGTTTCCTGAGGCAAAGATTACATCATTTTTGGTTTTAGAAGAAGTGCCACCTATACTACTCATAGCTATTGGCTTGGACAGTGGTTCTATTTACTGCATCAAAGGAGACATTGCACGGGAGCGTATCACTCGTTTCAAGCTTCAGGTGGAAAACAACCATTCGGACAAAACTCTTTCTGCTGTAACTGGACTTGGGTTTAGGGTGGATGGTCAATCTCTACAGTTATTTGTTGTGACTCCAAGTTCAGTGAGCTTGTTTTCGTTGCATGATCAACCGCCAAGAAGGCAGACCCTTGATCAGATTGGATCTGGTGTGAACAGTGTTGCAATGAGTGATCGATCTGAGTTGATAATTGGTCGACCAGAGGCAGTATATTTTTATGAAGTTGATGGGCGTGGTCCTTGTTGGGCTTTTGAGGGAGAGAAGAAATTGCTTGGATGGTTTCGTGGATACCTTTTGTGTGTTATTGCAGATCAAAGAACAGGAAAGCATACTTTCAACATCTATGACCTGAAGAATCGATTAATAGCTCACAGTGCATTGGTTAAAGAAGTTTCTCATATGCTCTATGAATGGGGTAACATCATACTCATAATGAATGACAAATCAGCTTTATGTATTGGAGAAAAGGATATGGAAAGCAAGCTAGACATGTTATTCAAGAAAAACCTATATACTGTAGCAATTAATCTTGTACAGACTCAGCAAGCAGATGCAGCAGCTACTGCTGAAGTGTTAAGGAAATATGGGGATCATCTATATAGCAAGCAAGACTATGATGAAGCAATGGCCCAGTACATACATACTATTGGTCACCTTGAACCTTCTTATGTTATACAGAAGTTTTTGGATGCTCAAAGGATCTACAACCTCACAAATTACTTAGAGAAGCTACATGAGAAGGGTCTTGCTTCTAAAGATCACACCACACTTCTATTAAACTGTTACACTAAATTGAAAGATGTTGAAAAGTTAAATCTATTTATTAAAAGCGATGACAGCATTGGGGAACTTAAATTTGATGTGGAAACAGCAATCAGGGTTTGCCGTGCTGCCAATTACCATGAGCATGCAATGTATGTTGCAAAGAAAGCAGGGAGGCATGAATGGTActtgaagatcttgcttgaagatcttgGTAGCTATGAAGAAGCCTTGGAATATATTTCAAGCCTTGAATCAAGTCAGGCAGGGATGACAATAAAGGAGTATGGGAAGATTCTGATAGAGCACAAGCCAGTGGAGACAATTCAGATTCTCATAAGGCTTTGCACAGAAGATGGTGACAAAAGAGGACGCTCAAATGGAGTGTACATGTCTATGTTGCCATCTCCTGTTGATTTTCTTAGCATCTTCATTCATCATCCTCAGTCCCTTATGGATTTTCTTGAAAAATATACCAATAAGGTCAAGGACTCACCTGCTCAAGTTGAGATTCACAATACCCTCTTAGAGTTGTATATATCCAATGAATTGAACTTTCCTTCAATGTCACAAGTTAATGATGGTGGAAATTACCTTAATGGAGCATCAGCAAAAACCATGATTTTAAGTGCTCAATCTAATGGAAACATTGGTGATCACAAAAGTTCAGAGCAGGAAAAGAACCATCTCGAAAGACTTGAAAAGGGTTTACGCTTGCTTAAGACTGCATGGCCTCCAGAGACAGAACATCCACAATATGATGTTGATTTAGCTATTATACTATGTGAAATGAATGCATTCAAAGATGGGCTTTTGTATTTGTATGAGAAGATGAAACTCTATAAAGAAGTGATTGCTTGCTATATGCAGGCACACGATCATGAGGGGCTAATTGCATGCTGCAAGAGGCTGGGGGATTCTGTTAAAGGAGGGGACTCATCTCTTTGGGCAGATGTACTTAAATATTTTGGTGAGCTTGGAGAAGATTGTTCTAAAGAAGTAAAAGAAGTTCTGACTTATATTGAGAGGGATGATATTTTGCCCCCTATGATTGTGCTTCAAACTCTTTCCCGAAATCCATGCCTCACGCTTTCTGTGCTCAAAGATTACATTGCTCGAAAGCTTGAGCGGGAATCAAAGATGATTGAGGAGGACCGACAAGCTATTGAGAAATATCAGGAAGATACACTGGCAATGAGAAAAGAGATTCAAGATCTTAGGACAAATGCTCGAATTTTTCAGCTTAGCAAGTGCACTGCATGCACCTTCACCCTTGATTTGCCTGCCGTGCACTTCATGTGCATGCACTCATTCCACCTGCGCTGCCTTGGTGATAATGAAAAAGAATGCCCTCAGTGTGCACCTGAATATAGGTCTGTCTTAGAAATGAAAAAAAATTTAGAGCAAAATTCTAAGGATCAGGACAGATTTTTTCAGCAGGTGAAGAGCTCTAAAGATGGGTTTTCTGTCATTGCTGAATATTTTGGAAAAGGGATCATCAGCAAAATAAGTAATGGATCCACTTCTGGTCCCGTATCCGGAACTGCATCATCCAGTAGTGGTTTCTAA 2901 0.4126 MYQWRKFEFFEEKYGAKCAVPEADEDDSGVIAAERKIECCSSGRGKVVTGFDDGVVCFFDRGLKFNYAFQPHSSSVLFLQQLKQRNFLVTIGEDEQLTPQQTALCLKVFDLDKMQSESSSTTSPDCVGILRIFTNQFPEAKITSFLVLEEVPPILLIAIGLDSGSIYCIKGDIARERITRFKLQVENNHSDKTLSAVTGLGFRVDGQSLQLFVVTPSSVSLFSLHDQPPRRQTLDQIGSGVNSVAMSDRSELIIGRPEAVYFYEVDGRGPCWAFEGEKKLLGWFRGYLLCVIADQRTGKHTFNIYDLKNRLIAHSALVKEVSHMLYEWGNIILIMNDKSALCIGEKDMESKLDMLFKKNLYTVAINLVQTQQADAAATAEVLRKYGDHLYSKQDYDEAMAQYIHTIGHLEPSYVIQKFLDAQRIYNLTNYLEKLHEKGLASKDHTTLLLNCYTKLKDVEKLNLFIKSDDSIGELKFDVETAIRVCRAANYHEHAMYVAKKAGRHEWYLKILLEDLGSYEEALEYISSLESSQAGMTIKEYGKILIEHKPVETIQILIRLCTEDGDKRGRSNGVYMSMLPSPVDFLSIFIHHPQSLMDFLEKYTNKVKDSPAQVEIHNTLLELYISNELNFPSMSQVNDGGNYLNGASAKTMILSAQSNGNIGDHKSSEQEKNHLERLEKGLRLLKTAWPPETEHPQYDVDLAIILCEMNAFKDGLLYLYEKMKLYKEVIACYMQAHDHEGLIACCKRLGDSVKGGDSSLWADVLKYFGELGEDCSKEVKEVLTYIERDDILPPMIVLQTLSRNPCLTLSVLKDYIARKLERESKMIEEDRQAIEKYQEDTLAMRKEIQDLRTNARIFQLSKCTACTFTLDLPAVHFMCMHSFHLRCLGDNEKECPQCAPEYRSVLEMKKNLEQNSKDQDRFFQQVKSSKDGFSVIAEYFGKGIISKISNGSTSGPVSGTASSSSGF 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma07g01097 966 SUPERFAMILY WD40 repeat-like 39 258 IPR036322 GO:0005515
Gma07g01097 966 PIRSF Vps11 569 952 IPR016528 -
Gma07g01097 966 PIRSF Vps11 1 576 IPR016528 -
Gma07g01097 966 Pfam Zinc-finger 862 897 IPR001841 -
Gma07g01097 966 Coils Coil 816 853 - -
Gma07g01097 966 CDD RING-H2_Vps11 860 900 - -
Gma07g01097 966 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 3 945 - -
Gma07g01097 966 Gene3D - 35 316 IPR015943 GO:0005515
Gma07g01097 966 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 11 HOMOLOG 3 945 IPR016528 -
Gma07g01097 966 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 402 553 IPR000547 GO:0006886|GO:0016192
Gma07g01097 966 Pfam Vacuolar protein sorting protein 11 C terminal 902 944 IPR024763 -
Gma07g01097 966 Gene3D Tetratricopeptide repeat domain 336 650 IPR011990 GO:0005515
Gma07g01097 966 SUPERFAMILY RING/U-box 843 902 - -
Gma07g01097 966 Pfam Region in Clathrin and VPS 410 533 IPR000547 GO:0006886|GO:0016192
Gma07g01097 966 ProSiteProfiles Zinc finger RING-type profile. 862 897 IPR001841 -
Gma07g01097 966 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 569 776 IPR000547 GO:0006886|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma07g01097 Gma-Chr7 14040624 14046797 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma07g01097 K20179 - gmx:100793279 1892.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g00972 03 33193749 33200197 Gma07g01097 07 14040624 14046797 GST