Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g00972 ATGTATCAGTGGAGGAAGTTCGAGTTCTTCGAGGAGAAGTACGGCGCGAAGTGCGCGGTTCCCGAGAACGACGAAGACGACGGCGTCGTCGCGGCGGAGAGGAAGATCGAGTGCTGCTCGAGTGGTAGGGGCAAACTTGTCACCGGCTTCGACGACGGCGTCGTTTGCTTCTTCGATCGGGGCCTCAAGTTCAACTACTCTTTCCAGCCTCACTCTTCTTCCGTTCTTTTTCTTCAGCAACTCAAGCAACGCAACTTTCTGGTAACAATTGGGGAGGATGAACAGCTTACTCCCCAGCAATCAGCTTTGTGCCTCAAGGTTTTTGACCTAGACAAGATGCAACCAGAGAGTTCGAGCACAACGAGTCCTGATTGCGTTGGGATATTGCGGATATTCACTAATCAGTTTCCTGAGGCAAAGATTACATCGTTTTTGGTTTTAGAAGAAGTGCCACCTATACTACTCATAGCTATTGGCTTGGACAGTGGTTCTATTTACTGTATCAAAGGAGACATTGCACGGGAGCGTATCACCCGTTCCAAGCTTCAGGTGGAAAACAACCATTTGGACAAAACTCTTTCGGCTGTAACTGGACTTGGTTTTAAGGTGGATGGTCAATCTCTACAGTTATTTGCGGTGACTCCATGTTCAGTTAGCTTGTTTTCATTGCATGATCAACCGCCGAGAAGGCAGACCCTTGATCAGATTGGATCTGGTGTGAACAGTGTTGCAATGAGTGATCGCTCTGAGTTGGTAATTGGTCGACCAGAGGCAGTATATTTTTATGAAGTTGATGGGCGTGGTCCTTGTTGGGCTTTTGAGGGAGAGAAGAAATTGCTTGGATGGTTCCGTGGATACCTTTTGTGTGTTATTGCAGATCAAAGAACAGGAAAGCATACTTTCAACATCTATGACCTGAAGAATCGATTAATAGCCCACAGTGCATTGGTTAAAGAAGTTTCTTATATGCTTTATGAATGGGGTAACATCATACTCGTAATGAATGATAAATCAGCTTTATGTATTGGAGAAAAGGATATGGAAAGTAAGTTAGACATGTTATTCAAGAAAAACCTATATACTGTAGCAATTAATCTTGTCCAGACTCAGCAAGCAGATGCAGCAGCTACAGCTGAAGTGCTAAGGAAATATGGGGATCATCTGTATAGCAAGCAAGACTATGATGAAGCAATGGCTCAGTACATACATACTATTGGTCACCTTGAACCTTCTTATGTTATACAGAAGTTTTTGGATGCTCAAAGGATCTACAACCTCACAAATTACTTAGAGAAGCTACATGAAAAGGGTCTTGCTTCTAAAGATCACACCACACTTCTATTAAACTGTTACACTAAATTGAAAGATGTTAAAAAGTTAAATCTATTTATTAAAAGCGATGACAGCATTGGGGAACTTAAATTTGATGTGGAAACAGCAATCAGGGTTTGCCGTGCTGCCAATTACCATGAGCATGCAATGTATGTTGCAAGGAAAGCAGGGAGGCATGAATGGTACTTGAAGATCCTGCTTGAAGATCTTGGTAGCTATGAAGAAGCCTTGGAATATATTTCAAGCCTTGAATCAAGTCAGGCAGGGATGACAATAAAGGAGTATGGGAAGATTCTGATAGAGCACAAGCCAGTGGAGACAATTCAGATTCTCATAAGGCTTTGCACGGAAGATGGTAACAAAAGAGGGCGCTCAAATGGAGTGTATATGTCTATGTTGCCATCTCCTGTTGATTTTCTTAGCATCTTCATTCATCATCCTCAGTCCCTTATGGATTTTCTTGAAAAATATACCAATAAGGTCAAGGACTCACCTGCTCAAGTTGAGATTCATAATACCCTCTTAGAGTTGTATATATCCAATGAATTAAACTTTCCTTCAATGTCGCAAGTTAATGATGGTGGAAATTACCTTAATGGAGCATCAGCAAAAACCATGATTTTAAGTGCTCAGTCTAATGGAAACATTGGTGATCACAAAAGTTCAGAGCAGGGAAAGGACCATCTCGAAAGGCGTGAAAAGGGTTTACGCTTGCTTAAGAGTGCATGGCCTCAAGAGACAGAACATCCACAATATGATGTTGATTTATCTATTATACTATGTGAAATGAATGCATTCAAAGATGGGCTTTTGTATTTGTATGAAAAGATGAAACTCTATAAAGAAGTGATTGCTTGCTATATGCAGGCACATGATCATGAGGGGTTAATTGCATGCTGCAAGAGGCTGGGGGATTCTGTTAAAGGAGGGGACTCATCTCTTTGGGCAGATGTACTTAAATATTTTGGTGAGCTTGGAGAAGATTGTTCTAAAGAAGTAAAAGAAGTTCTGACTTATATTGAGAGGGATGATATTTTGCCCCCTATGATTGTGCTTCAAACTCTTTCCCGAAATCCATGCCTCACACTTTCTGTGCTCAAAGATTACATTGCTCGAAAGCTTGAGCGGGAATCAAAGATGATTGAGGAGGACCGACAAGCTATTGAGAAATATCAGGAAGATACACTGGCAATGAGAAAAGAGATTCAAGATCTTAGGACAAATGCTCGAATTTTTCAGCTTAGCAAGTGCACTGCGTGCACCTTCACCCTTGATTTGCCTGCCGTGCACTTCATGTGCATGCACTCATTCCACCTGCGCTGCCTTGGCGATAATGAAAAAGAATGCCCTGAGTGTGCTCCTGAATATAGGTCCGTCTTAGAAATGAAAAGAAATTTAGAGCAAAATTCTAAGGATCAGGACAGGTTTTTTCAGCAGGTGAAGAGCTCTAAAGATGGGTTTTCTGTCATTGCTGAATATTTTGGAAAAGGGATCATCAGCAAAATAAGTAATGGATCCACTTCTGGTCCCAGATCCGGAACTGCATCATCCACCAGTGGTTTCTAA 2898 0.4182 MYQWRKFEFFEEKYGAKCAVPENDEDDGVVAAERKIECCSSGRGKLVTGFDDGVVCFFDRGLKFNYSFQPHSSSVLFLQQLKQRNFLVTIGEDEQLTPQQSALCLKVFDLDKMQPESSSTTSPDCVGILRIFTNQFPEAKITSFLVLEEVPPILLIAIGLDSGSIYCIKGDIARERITRSKLQVENNHLDKTLSAVTGLGFKVDGQSLQLFAVTPCSVSLFSLHDQPPRRQTLDQIGSGVNSVAMSDRSELVIGRPEAVYFYEVDGRGPCWAFEGEKKLLGWFRGYLLCVIADQRTGKHTFNIYDLKNRLIAHSALVKEVSYMLYEWGNIILVMNDKSALCIGEKDMESKLDMLFKKNLYTVAINLVQTQQADAAATAEVLRKYGDHLYSKQDYDEAMAQYIHTIGHLEPSYVIQKFLDAQRIYNLTNYLEKLHEKGLASKDHTTLLLNCYTKLKDVKKLNLFIKSDDSIGELKFDVETAIRVCRAANYHEHAMYVARKAGRHEWYLKILLEDLGSYEEALEYISSLESSQAGMTIKEYGKILIEHKPVETIQILIRLCTEDGNKRGRSNGVYMSMLPSPVDFLSIFIHHPQSLMDFLEKYTNKVKDSPAQVEIHNTLLELYISNELNFPSMSQVNDGGNYLNGASAKTMILSAQSNGNIGDHKSSEQGKDHLERREKGLRLLKSAWPQETEHPQYDVDLSIILCEMNAFKDGLLYLYEKMKLYKEVIACYMQAHDHEGLIACCKRLGDSVKGGDSSLWADVLKYFGELGEDCSKEVKEVLTYIERDDILPPMIVLQTLSRNPCLTLSVLKDYIARKLERESKMIEEDRQAIEKYQEDTLAMRKEIQDLRTNARIFQLSKCTACTFTLDLPAVHFMCMHSFHLRCLGDNEKECPECAPEYRSVLEMKRNLEQNSKDQDRFFQQVKSSKDGFSVIAEYFGKGIISKISNGSTSGPRSGTASSTSGF 965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g00972 965 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 11 HOMOLOG 3 944 IPR016528 -
Gma03g00972 965 SUPERFAMILY RING/U-box 842 901 - -
Gma03g00972 965 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 3 944 - -
Gma03g00972 965 Pfam Region in Clathrin and VPS 409 532 IPR000547 GO:0006886|GO:0016192
Gma03g00972 965 Coils Coil 815 852 - -
Gma03g00972 965 SUPERFAMILY WD40 repeat-like 38 257 IPR036322 GO:0005515
Gma03g00972 965 PIRSF Vps11 568 951 IPR016528 -
Gma03g00972 965 PIRSF Vps11 1 576 IPR016528 -
Gma03g00972 965 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 401 552 IPR000547 GO:0006886|GO:0016192
Gma03g00972 965 ProSiteProfiles Zinc finger RING-type profile. 861 896 IPR001841 -
Gma03g00972 965 Pfam Vacuolar protein sorting protein 11 C terminal 901 943 IPR024763 -
Gma03g00972 965 CDD RING-H2_Vps11 859 899 - -
Gma03g00972 965 Gene3D Tetratricopeptide repeat domain 332 649 IPR011990 GO:0005515
Gma03g00972 965 Gene3D - 34 331 IPR015943 GO:0005515
Gma03g00972 965 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 568 775 IPR000547 GO:0006886|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g00972 Gma-Chr3 33193749 33200197 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g00972 K20179 - gmx:100778100 1925.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g00972 03 33193749 33200197 Gma07g01097 07 14040624 14046797 GST