Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma07g00088 ATGTATCGATTAGCTCGTAGAGTAGGATCCTCCATTGCTTCTCCTTCCGCTAAGAATCTCGTATATGGTGGAGTATTGTCAAGCAGAAATTTTGTGAGCAAAGATATCAACTTTGGGGTTGGGGCTCGTGCCGCAATCCTCCATGGGGTAACTGAGGTTGCTGATGCTGTCAAAGTTACCATGGGACCCAAGGGTCGCAATGTGATAATTGAGAGAAGTCGTGGGAATCCCAGGATCACAAAGGATGGTGTGACTGTGGCCAAAAGTATCAAATTTAAAGACAAATCAAAAAATGTTGGTGCGGATCTAGTCAAGCAGGTGGCCAAGGCTACCAACACTGCTGCTGGAGATGGTACAACTTGTGCAACTGTTTTGACTCAGGCAATACTCACAGAAGGATGCAAATCGATTGCTGCTGGTGTAAATGTTATGGATTTACGTCATGGAATAAATAAGGCAGTTGATGCTGTAATTACTGAGTTGAAGAGGAGAGCATTGATGATTAGTACGTCAGAAGAGATAACCCAGGTTGGAACTATATCTGCAAATGGGGAGCGTGACATTGGAGAATTGATAGCAAGGGCAATGGAGAAAGTTGGGAAGGAAGGGGTCATTACTGTCGTTGATGGGAACACTTTGGATAATAAGTTGGAAGTGGTAGAAGGAATGAAGTTAACCAGAGGCTACATATCTCCTTATTTTATTACTGATCAGAAGACCCAGAAATGTGAATTGGAGAACCCCTTTATTCTCATCCATGACAAGAAAATTTCAGACATAAATTCACTGCTGAAAATACTGGAGCTGGCTGTAACGAAAAAAAGACCACTCCTAGTTGTTGCTGAAGATGTTGAGAGTGATGCATTGGCTATGCTCATACTCAACAAGCATCACGCAGGGCTTAAGGTTTGTGCTGTAAAAGCTCCTGGTTTTGGGGATAATAGAAGAGCAAGTCTAGACGATCTTGCAATTCTTACTGGAGGAGAGGTCATCACTGATGAGCGTGGTTTGGCTCTTGATAAAGTCCAACCAGAAATGCTTGGCACTGCAAAAAAGGTTACTATCACCATTGATGACACTATTATTCTACATGGTGGTGGGGATAAGAAGGTCATTGAAGAGAGATGTGAACAGCTGAGGACAGCTATGGAAAAGAGTTCTGCCACATTTGATAAAGAAAAAGCACAAGAACGCCTATCAAAACTATCTGGTGGTGTAGCTGTTTTCAAAGTTGGGGGGGCTAGTGAGGCCGAAGTTGGGGAAAGGAAAGATAGAGTAACAGATGCTTTAAATGCCACTAGAGCAGCTGTGGAAGAGGGAATTGTTCCGGGTGGTGGAGTTGCTCTCCTATATGCTACCAAAGTCTTGGATAACCTTCAAACCCAAAATGAAGATGAGAAAAGAGGAGTACAAATTATTCAAAATGCACTCAAGGCACCGACGATTACAATAGCTTCAAATGCTGGTTTTGATGGTGCTTTGGTCCACAGCAAATTGTTGGAACAAGATGATCATAATTTAGGTTTTGATGCTGCTAAAGGTGTCTATGCTGATATGGTAAAGGCTGGAATAATAGATCCTCTCAAAGTTGTTAGAACTGCTTTGGTAGATGCTGCCAGTGTGTCATTGCTACTGACAACAACCGAGGCAGCTGTGGTGGATAATTCACATGACAAGAATAAACCTCCTAGTCGGGTGCCAGATATGGATGATTTGGATCTCTAA 1725 0.4272 MYRLARRVGSSIASPSAKNLVYGGVLSSRNFVSKDINFGVGARAAILHGVTEVADAVKVTMGPKGRNVIIERSRGNPRITKDGVTVAKSIKFKDKSKNVGADLVKQVAKATNTAAGDGTTCATVLTQAILTEGCKSIAAGVNVMDLRHGINKAVDAVITELKRRALMISTSEEITQVGTISANGERDIGELIARAMEKVGKEGVITVVDGNTLDNKLEVVEGMKLTRGYISPYFITDQKTQKCELENPFILIHDKKISDINSLLKILELAVTKKRPLLVVAEDVESDALAMLILNKHHAGLKVCAVKAPGFGDNRRASLDDLAILTGGEVITDERGLALDKVQPEMLGTAKKVTITIDDTIILHGGGDKKVIEERCEQLRTAMEKSSATFDKEKAQERLSKLSGGVAVFKVGGASEAEVGERKDRVTDALNATRAAVEEGIVPGGGVALLYATKVLDNLQTQNEDEKRGVQIIQNALKAPTITIASNAGFDGALVHSKLLEQDDHNLGFDAAKGVYADMVKAGIIDPLKVVRTALVDAASVSLLLTTTEAAVVDNSHDKNKPPSRVPDMDDLDL 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma07g00088 574 SUPERFAMILY GroEL-intermediate domain like 168 234 IPR027410 -
Gma07g00088 574 PANTHER CHAPERONIN CPN60-2, MITOCHONDRIAL 24 566 - -
Gma07g00088 574 Gene3D - 36 553 IPR027413 -
Gma07g00088 574 Gene3D GroEL 222 403 IPR027409 -
Gma07g00088 574 SUPERFAMILY GroEL apical domain-like 215 406 IPR027409 -
Gma07g00088 574 TIGRFAM GroEL: chaperonin GroL 33 556 IPR001844 GO:0042026|GO:0140662
Gma07g00088 574 Hamap Chaperonin GroEL [groEL]. 32 572 IPR001844 GO:0042026|GO:0140662
Gma07g00088 574 ProSitePatterns Chaperonins cpn60 signature. 435 446 IPR018370 GO:0005524|GO:0006457
Gma07g00088 574 SUPERFAMILY GroEL equatorial domain-like 37 552 IPR027413 -
Gma07g00088 574 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 24 566 - -
Gma07g00088 574 Coils Coil 456 476 - -
Gma07g00088 574 Pfam TCP-1/cpn60 chaperonin family 53 554 IPR002423 GO:0005524
Gma07g00088 574 MobiDBLite consensus disorder prediction 555 574 - -
Gma07g00088 574 Gene3D - 167 440 IPR027410 -
Gma07g00088 574 PRINTS 60kDa chaperonin signature 57 83 IPR001844 GO:0042026|GO:0140662
Gma07g00088 574 PRINTS 60kDa chaperonin signature 113 140 IPR001844 GO:0042026|GO:0140662
Gma07g00088 574 PRINTS 60kDa chaperonin signature 298 321 IPR001844 GO:0042026|GO:0140662
Gma07g00088 574 PRINTS 60kDa chaperonin signature 380 405 IPR001844 GO:0042026|GO:0140662
Gma07g00088 574 PRINTS 60kDa chaperonin signature 428 449 IPR001844 GO:0042026|GO:0140662
Gma07g00088 574 CDD GroEL 34 554 IPR001844 GO:0042026|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma07g00088 Gma-Chr7 729925 736968 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma07g00088 K04077 - gmx:100787285 1086.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g00088 07 729925 736968 Gma08g01779 08 15819062 15826296 GST