Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01887 ATGGATTCGGATGGCAGCCTAACGATTTTGGAGCTAGCTGCGCTCCTTCGGTCAATAGGGCTGAATCCCTCGGGGGATGAAATCCATGCCTTGTTGGCCAACATGGACTCAAATGGCAATGGCTTTGTGGAGTTTGATGAGTTGGTGGATGCAATATTGCATGACATAAGTGCAGAGATTTTGTTGAAACAAGAAATGCTATTTGGGGTGTTCAAGTGTTTTGACCGTGATGGGAATGGTTACATAACGGCAGCGGAGTTAGCAGGGGCAATGGCCAAAATGGGTCAACCCGTTACATATAGAGAGCTCACAGAGATGATCACAGAGGCTGACACAGATGGTGATGGTGTGATTAGTTTCAATGAATTTGTCACTGTGATGGGTAGGTCAGCCACTCACTTCTTAGGCCTTGCATTGTTGTAA 423 0.4634 MDSDGSLTILELAALLRSIGLNPSGDEIHALLANMDSNGNGFVEFDELVDAILHDISAEILLKQEMLFGVFKCFDRDGNGYITAAELAGAMAKMGQPVTYRELTEMITEADTDGDGVISFNEFVTVMGRSATHFLGLALL 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01887 140 CDD EFh 66 127 IPR002048 GO:0005509
Gma06g01887 140 ProSitePatterns EF-hand calcium-binding domain. 36 48 IPR018247 -
Gma06g01887 140 ProSiteProfiles EF-hand calcium-binding domain profile. 62 97 IPR002048 GO:0005509
Gma06g01887 140 SMART efh_1 66 94 IPR002048 GO:0005509
Gma06g01887 140 SMART efh_1 27 55 IPR002048 GO:0005509
Gma06g01887 140 SMART efh_1 102 130 IPR002048 GO:0005509
Gma06g01887 140 ProSitePatterns EF-hand calcium-binding domain. 111 123 IPR018247 -
Gma06g01887 140 PANTHER CALCIUM-BINDING PROTEIN CML15-RELATED 1 138 - -
Gma06g01887 140 ProSiteProfiles EF-hand calcium-binding domain profile. 98 133 IPR002048 GO:0005509
Gma06g01887 140 SUPERFAMILY EF-hand 2 127 IPR011992 -
Gma06g01887 140 Pfam EF-hand domain pair 11 51 IPR002048 GO:0005509
Gma06g01887 140 Pfam EF-hand domain pair 65 127 IPR002048 GO:0005509
Gma06g01887 140 ProSiteProfiles EF-hand calcium-binding domain profile. 23 58 IPR002048 GO:0005509
Gma06g01887 140 PANTHER CALCIUM BINDING PROTEIN 1 138 - -
Gma06g01887 140 Gene3D - 58 137 - -
Gma06g01887 140 Gene3D - 1 57 - -
Gma06g01887 140 CDD EFh 2 52 IPR002048 GO:0005509
Gma06g01887 140 ProSitePatterns EF-hand calcium-binding domain. 75 87 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01887 Gma-Chr6 20753741 20754163 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g01887 1 139 EF-hand Containing Proteins AT1G18530 71.942 6.98e-72 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01887 K13448 - gmx:100790108 275.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g01887 06 20753741 20754163 Gma04g01360 04 26461431 26462042 ECH
Gma06g01887 06 20753741 20754163 Gma06g01887 06 20753741 20754163 ECH