Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01360 ATGTGTGTTTGTGGTAGAGTTTTGGATTCGCGTCAATCCAAACATCTTGTCTTGTTCGTGGGACGCATTGTATTCATGTATTGCACGTCCCTCTTGCATTGTTGTTTTGTTGATTACATTGAGAACAAGATGTCAAAGCTTCAGGTGAATCAACTCAATCAATTAAGGGAAATTTTTGCAAAATTTGACATGGATTCGGATGGCAGCCTAACGATTTTGGAACTCGCCGCGCTCCTTCGATCGTTGGGGCTGAATCCCTCAGGGGACGAAATCCATGCCTTGTTAGCCAACATGGACTCAAATGGCAATGGCTTTGTGGAGTTTGATGAGTTGGTGGAAGCAATATTGCATGACATAAGTGCAGAGATTTTGTTGAACCAAGAAATGCTATTTGGGGTGTTCAAGTGTTTTGACCGTGATGGGAACGGTTACATAACAGCTGCGGAGTTAGCAGGGGCAATGGCAAAAATGGGTCAACCCCTTACATATAGAGAGCTCACAGAGATGATCACAGAGGCTGACACAGATGGTGATGGTGTGATTAGTTTCAATGAATTTGCCTCTGTGATGGGTAGGTCAGCCTCTGACTTCTTAGGCCTTGCATTGTTGTGA 612 0.4412 MCVCGRVLDSRQSKHLVLFVGRIVFMYCTSLLHCCFVDYIENKMSKLQVNQLNQLREIFAKFDMDSDGSLTILELAALLRSLGLNPSGDEIHALLANMDSNGNGFVEFDELVEAILHDISAEILLNQEMLFGVFKCFDRDGNGYITAAELAGAMAKMGQPLTYRELTEMITEADTDGDGVISFNEFASVMGRSASDFLGLALL 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01360 203 CDD EFh 54 115 IPR002048 GO:0005509
Gma04g01360 203 ProSitePatterns EF-hand calcium-binding domain. 138 150 IPR018247 -
Gma04g01360 203 Gene3D - 29 194 - -
Gma04g01360 203 ProSitePatterns EF-hand calcium-binding domain. 99 111 IPR018247 -
Gma04g01360 203 PANTHER CALCIUM-BINDING PROTEIN CML15-RELATED 46 201 - -
Gma04g01360 203 CDD EFh 129 190 IPR002048 GO:0005509
Gma04g01360 203 ProSiteProfiles EF-hand calcium-binding domain profile. 50 85 IPR002048 GO:0005509
Gma04g01360 203 PANTHER CALCIUM BINDING PROTEIN 46 201 - -
Gma04g01360 203 ProSiteProfiles EF-hand calcium-binding domain profile. 86 121 IPR002048 GO:0005509
Gma04g01360 203 ProSiteProfiles EF-hand calcium-binding domain profile. 125 160 IPR002048 GO:0005509
Gma04g01360 203 ProSiteProfiles EF-hand calcium-binding domain profile. 161 196 IPR002048 GO:0005509
Gma04g01360 203 ProSitePatterns EF-hand calcium-binding domain. 174 186 IPR018247 -
Gma04g01360 203 Pfam EF-hand domain pair 128 190 IPR002048 GO:0005509
Gma04g01360 203 Pfam EF-hand domain pair 53 115 IPR002048 GO:0005509
Gma04g01360 203 ProSitePatterns EF-hand calcium-binding domain. 63 75 IPR018247 -
Gma04g01360 203 SUPERFAMILY EF-hand 45 190 IPR011992 -
Gma04g01360 203 SMART efh_1 165 193 IPR002048 GO:0005509
Gma04g01360 203 SMART efh_1 129 157 IPR002048 GO:0005509
Gma04g01360 203 SMART efh_1 54 82 IPR002048 GO:0005509
Gma04g01360 203 SMART efh_1 90 118 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01360 Gma-Chr4 26461431 26462042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01360 50 202 EF-hand Containing Proteins AT1G18530 73.856 8.26e-82 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01360 K13448 - gmx:100813924 391.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g01887 06 20753741 20754163 Gma04g01360 04 26461431 26462042 ECH
Gma04g01360 04 26461431 26462042 Gma04g01360 04 26461431 26462042 ECH