Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01866 ATGAAGGTCCGGTCGATGAAGCTGAAGGAGGCCCACACCGCGAAGAGCGGCGGCGCGGCCTTCTGCTCCGTCCTGTGGGACCAGAAAGCGAAGCACCTGATCACTGCGTCCTCCTCCGACGTCGCCATCTGCATCCACGACTCCCTTTTCCCCTCCCTCGCTCCGAAAACCCTCCGCCACCACCGCGATGGCGTCACCGCCCTGGCCCTCAGCCCTAATTCTACTTGCCTCGCCTCCGGATCCGTCGACCACTCCGTCAAGCTCTACAAGTATCCCGGTGGAGAATTCGAGAGAAATATTACAAGGTTTACACTTCCAATACGTTCCCTGGCATTTAACAAATCTGGAAGCATGCTGGCAGCGGCTGGTGATGATGAGGGTATCAAGCTTATAAACACATTTGATGGTACCATTGCGAGGGTTCTCAAAGGACATAAAGGGTCTATCACTGGCTTGGCTTTTGACCCTAATGGCGAATACTTAGCGTCCCTGGATTCAACTGGAACTGTTATTTTGTGGGAGCTTCAGTCTGGGAAAATCATTCATAACCTCAAAGGCATAGCTCCTGACACTGGGCTGGATGTTTCAACTATGAATGTTCTTTGCTGGAGTCCTGATGGTGAGACCTTAGCTGTTCCTGGGTTGAAAAATGATGTAGTAATGTATGATAGGGACACTGCCGAGAAGGTGTTATCTTTGAGAGGTGATCACATACAGCCAATATGTTTCTTGTGTTGGTCACCCAATGGAAAGTACATTGCTTCCTCTGGTTTAGATAGGCAGGTTCTGATTTGGGATGTTGATAGGAAGCAGGATATTGATAGACAGAAGTTTGATGAGAGAGTGTGTTGCATGGCGTGGAAGCCGACTGGGAATGCATTGGCTGTTATTGATATTATGGGGAAGTATGGTATTTGGGACAATGTTATTCCTTCGTCTATGAAGTCCCCAACCGAGGATATACCTGTGAAGAGTAAAAGCAATGGGGTTGTTTATTTTGATGAGGAGGATCCTGAAAATAGTGCAAGTGAAAACTCGAGTGATGTGGGTGGAAATAGTAACCAGGAGTCTGAGCCACCAAGCAGGAAAAGATCCCGTAAACAGTCTCTGAGTGAGGAAAATTCTGGTGAGGATGGAGGTGAGGAAATTGTATCATATCCAAAGGTTGATACTAACAAGAAACGAAATCGACCAAGCAAGGAAAATTTGGATAGTGTGAATATGGGATTTAGAGGCACCATGGTAACATCCAAGGCAAAGATGCAGGAGCCATTTCAACCAGGATCTACTCCTGTGCAGCCTGGGAAAAGGCGTTTCTTATGCTACAATATGCTTGGATGTATAACCTCTATTGAGCATGATGGATACTCCCATATTGAGATTGATTTTCATGATACTGGAAGCACTCCACGAGTTCCTTCAATGACTGATCATTTTGGATTTACAATGGCAGCATTGAATGAGAGTGGGAGCATATTTGCAAATCCTTGTAAGGGGGAGAATAATATGAGCACCCTTATGTATCGTCCATTTAGTAGCTGGGCAAATAATAGCGAGTGGTCTATGCGCTTTGAAGGAGAAGAAGTGAAGGTTGTTGCACTTGGTTCTGCTTGGGTTGCAGCGGTAACTAGTTTTAACTATCTTCGCATCTTTTCTGAAGGTGGTTTGCAGAGAGACGTGTTTTCACTAGATGGGCCAGTGGTGACAGCATCCGGTTTCAAGGATAAGCTTGCAGTTGTCACTCATGCTACTGATGGCCTTCTCTCAAATGATCAGAAGCTAGAGTTTATGGTATTTAATATTCCTCGTGGGACCCTACTTCTTCAAGGTCGCTTGCCACTATCCCCTGGTTCATCCCTAAGTTGGTTTGGGTTTAGTGAAGAAGGCCAATTGTGTTCATACGATTCGAAGGGTGTGCTAAGATCATATACAAGCAAATTTGGGGGCAGATGGATTCCACTCTTCAGTGCTACTAAAGAGAAGTCAGATGAAAACTATTGGGTGACTGGGTTGAATGCAAGCAAGGTATTTTGCGTGGTATGCAAAAAGCCCGAAGACTTCCCTCAGGTGATGCCTAAGCCAGTTCTCACCCCGTTGAATCTTTCGTTTCCTCTTGCTTCCTCTGACTTGGGGGGATCTGAAGCCCATGAAAAGGAGTTTATGATGAACAACTTGCGTCTCTATGAGATTCAGAGAACAATGGACGAAATGGCTTCTGTTGGTCTGGATACTACTTCACTTGATGATGATGCTTTCAATTTCGAAGCAGCACAAGATAAATGCATACTGAGGCTCATAGCAGCATGCTGCAACAGTGATAAGCTTGTGCGAGCTACTGAACTTGTGAAGCTTTTGACTCTGGAAAAATCAATGAGAGGTGCAGTAAAACTTGTTACTGCTATGAAGCTTCCAAACTTGGCCGAAAGGTTCAGCAGCATATTAGAGGAAAGGCTACTTGAAGAAGCCAAAAAAGCTATGGAAACCAACATCAAAGAAAATAGTGTTGCACCTGTTACAGCTGATGCTCTTCCTAACAGAAGCAAGGCCCCAACTCACACTGAAGCATTAAATGCAGTTACCATGTCATCATCTCCAAAATTATCTGCTCCGTCATTCCTAAGGAAAGACAAAACACAAGAGAGAGCTAAAGCTGGCACAAGCAAAACTGCAATGGTAAATGAAAATTTGAAGGTAAAGCAGACAGGGGAGGAAACAAGTGACAAGGTGGGGAAGGTTGTGCAACAAACTTCTCATCCGTATGATCCCTCTACGAAGTCCTCAAATAAGAATGGACTTAACaaGGCCTCTTTGGAATTTTTGGGTTCGGATCCTTTCAATTTTTTGGTTTAA 2850 0.4502 MKVRSMKLKEAHTAKSGGAAFCSVLWDQKAKHLITASSSDVAICIHDSLFPSLAPKTLRHHRDGVTALALSPNSTCLASGSVDHSVKLYKYPGGEFERNITRFTLPIRSLAFNKSGSMLAAAGDDEGIKLINTFDGTIARVLKGHKGSITGLAFDPNGEYLASLDSTGTVILWELQSGKIIHNLKGIAPDTGLDVSTMNVLCWSPDGETLAVPGLKNDVVMYDRDTAEKVLSLRGDHIQPICFLCWSPNGKYIASSGLDRQVLIWDVDRKQDIDRQKFDERVCCMAWKPTGNALAVIDIMGKYGIWDNVIPSSMKSPTEDIPVKSKSNGVVYFDEEDPENSASENSSDVGGNSNQESEPPSRKRSRKQSLSEENSGEDGGEEIVSYPKVDTNKKRNRPSKENLDSVNMGFRGTMVTSKAKMQEPFQPGSTPVQPGKRRFLCYNMLGCITSIEHDGYSHIEIDFHDTGSTPRVPSMTDHFGFTMAALNESGSIFANPCKGENNMSTLMYRPFSSWANNSEWSMRFEGEEVKVVALGSAWVAAVTSFNYLRIFSEGGLQRDVFSLDGPVVTASGFKDKLAVVTHATDGLLSNDQKLEFMVFNIPRGTLLLQGRLPLSPGSSLSWFGFSEEGQLCSYDSKGVLRSYTSKFGGRWIPLFSATKEKSDENYWVTGLNASKVFCVVCKKPEDFPQVMPKPVLTPLNLSFPLASSDLGGSEAHEKEFMMNNLRLYEIQRTMDEMASVGLDTTSLDDDAFNFEAAQDKCILRLIAACCNSDKLVRATELVKLLTLEKSMRGAVKLVTAMKLPNLAERFSSILEERLLEEAKKAMETNIKENSVAPVTADALPNRSKAPTHTEALNAVTMSSSPKLSAPSFLRKDKTQERAKAGTSKTAMVNENLKVKQTGEETSDKVGKVVQQTSHPYDPSTKSSNKNGLNKASLEFLGSDPFNFLV 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01866 949 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 58 90 - -
Gma06g01866 949 ProSitePatterns Trp-Asp (WD) repeats signature. 253 267 IPR019775 -
Gma06g01866 949 Gene3D - 195 322 IPR015943 GO:0005515
Gma06g01866 949 MobiDBLite consensus disorder prediction 359 374 - -
Gma06g01866 949 MobiDBLite consensus disorder prediction 343 358 - -
Gma06g01866 949 MobiDBLite consensus disorder prediction 335 408 - -
Gma06g01866 949 SUPERFAMILY WD40 repeat-like 20 307 IPR036322 GO:0005515
Gma06g01866 949 Pfam Minichromosome loss protein, Mcl1, middle region 423 705 IPR022100 -
Gma06g01866 949 CDD WD40 22 310 - -
Gma06g01866 949 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 142 179 - -
Gma06g01866 949 MobiDBLite consensus disorder prediction 383 401 - -
Gma06g01866 949 Gene3D - 2 194 IPR015943 GO:0005515
Gma06g01866 949 SMART WD40_4 51 90 IPR001680 GO:0005515
Gma06g01866 949 SMART WD40_4 1 47 IPR001680 GO:0005515
Gma06g01866 949 SMART WD40_4 135 174 IPR001680 GO:0005515
Gma06g01866 949 SMART WD40_4 269 307 IPR001680 GO:0005515
Gma06g01866 949 SMART WD40_4 93 132 IPR001680 GO:0005515
Gma06g01866 949 SMART WD40_4 177 223 IPR001680 GO:0005515
Gma06g01866 949 SMART WD40_4 226 266 IPR001680 GO:0005515
Gma06g01866 949 MobiDBLite consensus disorder prediction 907 931 - -
Gma06g01866 949 MobiDBLite consensus disorder prediction 875 931 - -
Gma06g01866 949 MobiDBLite consensus disorder prediction 884 899 - -
Gma06g01866 949 ProSiteProfiles Trp-Asp (WD) repeats profile. 234 275 IPR001680 GO:0005515
Gma06g01866 949 ProSiteProfiles Trp-Asp (WD) repeats profile. 142 183 IPR001680 GO:0005515
Gma06g01866 949 PANTHER WD REPEAT AND HMG-BOX DNA BINDING PROTEIN 1 928 - -
Gma06g01866 949 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 234 268 - -
Gma06g01866 949 ProSiteProfiles Trp-Asp (WD) repeats profile. 58 99 IPR001680 GO:0005515
Gma06g01866 949 Pfam Anaphase-promoting complex subunit 4 WD40 domain 144 185 IPR024977 -
Gma06g01866 949 Pfam WD domain, G-beta repeat 232 266 IPR001680 GO:0005515
Gma06g01866 949 Pfam WD domain, G-beta repeat 56 89 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01866 Gma-Chr6 20241342 20246887 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g01866 4 272 Miscellaneous Gene Families AT5G08390 23.443 2.60e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01866 K11274 - gmx:100818807 1836.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g01866 06 20241342 20246887 Gma06g01866 06 20241342 20246887 ECH
Gma04g01519 04 40731452 40741553 Gma06g01866 06 20241342 20246887 GST