Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01519 ATGAAGGTCCGGTCGATGAAGCTGAAGGAGGCCCACGCCGCAAAGGGCGGCCCCGCGTCGTTCTGCTCCGTCCTGTGGGACCAGAAAGCGAAACACTTGGTCACCGCGTCCTCCTCCGACGTCGCCGTCTGCATCCACGACCCCCTTTTCCCCTCCTTCGCTCCAAAAACCCTCCGCCACCACCGCGATGGCGTCACTGCCCTGGCCCTCAGCCCCAATTCCACTTGCCTCGCCTCTGGATCCGTCGATCACTCCGTCAAACTCTACAAGTATCCCGGTGGAGAGTTTGAGAGAAATATTACAAGGTTTACACTTCCAATACGTTCCCTGGCGTTTAACAAATCAGGGAGCATGCTGGCTGCGGCTGGTGATGATGAGGGTATCAAACTTATAAATACATTTGATGGTACCATTGCGAGGGTTCTCAAAGGACATAAAGGGTCTATCACTGGCTTGGCTTTTGACCCTAATGGCGAATACTTAGCCTCCCTGGATTTAACTGGAACTGTTATTTTGTGGGAGCTTCAGTCTGGGAAAATCATTCATAACCTTAAAGGCATAGCTCCTGGCACTGGGCTGGATGTTTCAACTATGAATGTTCTTTGCTGGAGTCCTGATGGTGAGACCTTAGCTGTTCCTGGGTTGAAAAATGATGTTGTAATGTATGATAGGGACACTGCCGAGAAGGTGTTTTTTTTGAGAGGTGATCACATACAGCCAATATGTTTCTTGTGTTGGTCACCCAATGGTGAGTACATTGCTACCTCTGGTTTAGACAGGCAGGTTCTGATTTGGGATGTTAGCAAGAAGCAGGACATTGACAGACAGAAGTTTGATGAGAGAGTCTGTTGCATGGCCTGGAAGCCAACTGGGAATGCATTGGCTGTCATTGATGTTATGGGGAAGTATGGTATTTGGGACAATGTTATTCCTTCGTCTATGAAGTCTCCAACCAAGGATATACCGGTGAAGAACAAAAGCAATGGGGTTGTTTATTTTGATGAGGAGGATCCTGAAAATAGTGCAAGTGGAAACTTGAGTGATATTGGTGGAAATAGTAATGAGGAGTCTGAGCCACCTAGCAGGAAAAGATCGCGTAAACACTCTCTGAGTGAGGAAAATTTAGGTGAGGATGGAGGTGAGGAAATTGTATCATATCTGAAGGTTGATACTCACAAGAAACGAAATCGATCAGGCAAGGAAAATTTGGATAGTGGGAATATGGGATTTAGAAGCACCATGGTAACATCCAAGGCAAAGATGCAGGAGGCATTTCAACCAGGATCTACTCCTGTGCAGCCTGGAAAAAGGCATTTCTTATGCTACAATATGCTAGGATGTATAACCTCTATTGAACATGATGGATACTCCCATATTGAGATTGATTTTCATGATACTGGAAGCACTCCACGAGTTCCTTCAATGACTGATCATTTTGGATTTACAATGGCAGCATTGAATGAGAGTGGGAGCGTATTTGCAAATCCTTGTAAGGGGGAGAAGAACATGAGCACCCTTATGTATCGTCCATTTAGTAGCTGGGCCAATAATAGCGAGTGGTCTATGCGCTTTGAAGGAGAAGAAGTGAAGGTTGTTGCACTTGGTTCTGCTTGGGTTGCAGCAGTAACTAGTTTTAACTATCTTCGCATCTTTTCTGAAGGTGGAATGCAGAGAGACGTGTTTTCACTAGATGGGCCAGTGGTTACAGCATCCGGTTTCAAGGATAAGCTTGCAGTTGTCACTCATGCTACTGATGGCCTTCCCTCAAATGATCAGATGTTAGAGTTTATGGCATTTAATATTCCTCGTGGGACCCAACTTCTTCAAGGTCGCTTGCCACTATCCCCTGGTTCATCCCTAAGTTGGTTTGGGTTTAGTGAAGAAGGCCAATTGTGTTCATACGATTCGAAGGGTGTGCTAAGATCATATACAAGCAAATTTGGGGGTAGATGGATTCCACTCTTCAGTGCTACTAAAGAGAAGTCAGATGAAAACTATTGGGTGACGGGGTTGAATGCAAGCAAGGTATTTTGCGTGGTATGCAAAAAACCTGAAGGCTTCCCTCAGGTGATGCCTAAGCCAGTTCTCACTCCATTGAGTCTTTCGTTTCCTCTTGCTTCCTCTGATTTGGGGGGATCTGAATCCCATGAAAAGGAGTTTATGATGAATAGCTTGCATCTCTATGAGATTCAGAGAACAATGGACGAAATGGATTCTGTTGGTCTGGACACTACTTCACTTGATGATGATGCTTTCAATTTGGAAGCTGCACAAGATAAATGCATTCTGAGGCTTATAGCAGCTTGCTGCAACAGTGATAAGCTTGTGCGAGCTACTGAACTAGTGAAGCTTTTGACTCTGGAAAAATCAATGAGAGGTGCAATAAAACTTGTTACTGCTATGAAGCTTCCAAACCTGGCCGAAAGGTTCAGCTGCATATTAGAGGAAAGGCTACTTGAAGAAGCCAAAAAAGCTATGGAAACCAACATCAAAGAAAATAGTGTTGCACCCGTTACTGCTGATGCTATTCCTGGCAGAAGCAAGGCCCCAACTCACACTGAAACATTAAATGCTGTTACCATGTCATCATCTCCAAAATTATCTGCTACATCATTCGTAAGGAAAGGCATAACACTAGAGGGAGCTAAAGCTGGCACTAGTAAAGCACCAATGGTAAATGAAACTCTGAAGGTAAAGCAGACAGGGGATGAATCAAGTGAAAAGGTGGGGAAGGTGGGAGATAAACGTCAAGTGCAACAAACTTCCCATCCATATGATCCCTCTACGAAGTCCTCAAATAAGAGTGGACTTAACaaGACTTCGATTGGCAAGCATGCTCTTGTTTCTTAA 2850 0.4488 MKVRSMKLKEAHAAKGGPASFCSVLWDQKAKHLVTASSSDVAVCIHDPLFPSFAPKTLRHHRDGVTALALSPNSTCLASGSVDHSVKLYKYPGGEFERNITRFTLPIRSLAFNKSGSMLAAAGDDEGIKLINTFDGTIARVLKGHKGSITGLAFDPNGEYLASLDLTGTVILWELQSGKIIHNLKGIAPGTGLDVSTMNVLCWSPDGETLAVPGLKNDVVMYDRDTAEKVFFLRGDHIQPICFLCWSPNGEYIATSGLDRQVLIWDVSKKQDIDRQKFDERVCCMAWKPTGNALAVIDVMGKYGIWDNVIPSSMKSPTKDIPVKNKSNGVVYFDEEDPENSASGNLSDIGGNSNEESEPPSRKRSRKHSLSEENLGEDGGEEIVSYLKVDTHKKRNRSGKENLDSGNMGFRSTMVTSKAKMQEAFQPGSTPVQPGKRHFLCYNMLGCITSIEHDGYSHIEIDFHDTGSTPRVPSMTDHFGFTMAALNESGSVFANPCKGEKNMSTLMYRPFSSWANNSEWSMRFEGEEVKVVALGSAWVAAVTSFNYLRIFSEGGMQRDVFSLDGPVVTASGFKDKLAVVTHATDGLPSNDQMLEFMAFNIPRGTQLLQGRLPLSPGSSLSWFGFSEEGQLCSYDSKGVLRSYTSKFGGRWIPLFSATKEKSDENYWVTGLNASKVFCVVCKKPEGFPQVMPKPVLTPLSLSFPLASSDLGGSESHEKEFMMNSLHLYEIQRTMDEMDSVGLDTTSLDDDAFNLEAAQDKCILRLIAACCNSDKLVRATELVKLLTLEKSMRGAIKLVTAMKLPNLAERFSCILEERLLEEAKKAMETNIKENSVAPVTADAIPGRSKAPTHTETLNAVTMSSSPKLSATSFVRKGITLEGAKAGTSKAPMVNETLKVKQTGDESSEKVGKVGDKRQVQQTSHPYDPSTKSSNKSGLNKTSIGKHALVS 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01519 949 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 58 90 - -
Gma04g01519 949 ProSiteProfiles Trp-Asp (WD) repeats profile. 234 275 IPR001680 GO:0005515
Gma04g01519 949 ProSitePatterns Trp-Asp (WD) repeats signature. 253 267 IPR019775 -
Gma04g01519 949 MobiDBLite consensus disorder prediction 915 942 - -
Gma04g01519 949 Pfam WD domain, G-beta repeat 140 173 IPR001680 GO:0005515
Gma04g01519 949 Pfam WD domain, G-beta repeat 56 89 IPR001680 GO:0005515
Gma04g01519 949 Pfam WD domain, G-beta repeat 236 266 IPR001680 GO:0005515
Gma04g01519 949 SMART WD40_4 135 174 IPR001680 GO:0005515
Gma04g01519 949 SMART WD40_4 7 47 IPR001680 GO:0005515
Gma04g01519 949 SMART WD40_4 226 266 IPR001680 GO:0005515
Gma04g01519 949 SMART WD40_4 269 307 IPR001680 GO:0005515
Gma04g01519 949 SMART WD40_4 93 132 IPR001680 GO:0005515
Gma04g01519 949 SMART WD40_4 177 223 IPR001680 GO:0005515
Gma04g01519 949 SMART WD40_4 51 90 IPR001680 GO:0005515
Gma04g01519 949 SUPERFAMILY WD40 repeat-like 18 307 IPR036322 GO:0005515
Gma04g01519 949 MobiDBLite consensus disorder prediction 900 914 - -
Gma04g01519 949 MobiDBLite consensus disorder prediction 334 409 - -
Gma04g01519 949 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 142 179 - -
Gma04g01519 949 Pfam Minichromosome loss protein, Mcl1, middle region 424 705 IPR022100 -
Gma04g01519 949 MobiDBLite consensus disorder prediction 357 375 - -
Gma04g01519 949 MobiDBLite consensus disorder prediction 891 949 - -
Gma04g01519 949 MobiDBLite consensus disorder prediction 383 401 - -
Gma04g01519 949 Gene3D - 196 308 IPR015943 GO:0005515
Gma04g01519 949 ProSiteProfiles Trp-Asp (WD) repeats profile. 142 183 IPR001680 GO:0005515
Gma04g01519 949 Gene3D - 2 195 IPR015943 GO:0005515
Gma04g01519 949 ProSiteProfiles Trp-Asp (WD) repeats profile. 58 99 IPR001680 GO:0005515
Gma04g01519 949 MobiDBLite consensus disorder prediction 340 356 - -
Gma04g01519 949 CDD WD40 15 310 - -
Gma04g01519 949 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 234 268 - -
Gma04g01519 949 PANTHER WD REPEAT AND HMG-BOX DNA BINDING PROTEIN 1 933 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01519 Gma-Chr4 40731452 40741553 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01519 61 294 Miscellaneous Gene Families AT5G08390 27.119 8.61e-16 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01519 K11274 - gmx:100809300 1870.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g01519 04 40731452 40741553 Gma04g01519 04 40731452 40741553 ECH
Gma04g01519 04 40731452 40741553 Gma06g01866 06 20241342 20246887 GST